Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1725 102 5e-20 seq295 91.5 9e-17 seq473 82.4 5e-14 seq758 78.8 6e-13 seq1109 75.2 7e-12 >seq1725 Length=212 Score = 102 bits (112), Expect = 5e-20 Identities = 70/75 (93%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||| Sbjct 90 TCTCACTAAGCCATT-CAATCGGTAGTAA-CGACGGGCGGTGTGTACAAAGGGCAGGGAC 33 Query 108 GTAATACAACGCAAG 122 ||||| ||||||||| Sbjct 32 GTAAT-CAACGCAAG 19 >seq295 Length=121342 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 120977 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 120921 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 120920 GGCAGGGACGTAAT-CAACGCGAGCT 120896 Score = 87.8 bits (96), Expect = 1e-15 Identities = 78/91 (86%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 34 CCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTA 93 ||||| ||||| | |||||||| |||| || |||||| || ||||||||||| ||||| Sbjct 68119 CCAAT-CCGAA-GACCTCACTAAATCATT-CAATCGGTACTA-GCGACGGGCGGTGTGTA 68174 Query 94 CAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||||||||||| |||||| |||| Sbjct 68175 CAAAGGGCAGGGACGTAAT-CAACGCGAGCT 68204 >seq473 Length=32739 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| ||| |||||| Sbjct 29634 TCCGAA-GACCTCACTAAAACATT-CAATCGGTAGTA-GCGACGGGCGGTGTGGACAAAG 29690 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| ||||| |||| Sbjct 29691 GGCAGGGACGTAAT-CAACGTGAGCT 29715 >seq758 Length=6947 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 3562 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 3505 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 3504 TAAT-CAATGCGAG 3492 >seq1109 Length=1103 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 147 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 204 Query 122 GCT 124 ||| Sbjct 205 GCT 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300788218040