Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1109 113 5e-23 seq355 91.5 2e-16 seq295 91.5 2e-16 >seq1109 Length=1103 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 1067 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATAGCTCTGTATACATTAGCATGGG 1008 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||| | || | ||||| || || | ||| || |||||||| | Sbjct 1007 ATAACGTCACAGGATTT-CGATCCTATTGCGTCGGCCTTCGGGATCGGA-GTAATGATTA 950 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 949 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 892 >seq355 Length=1373 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| ||||||||||| ||| || |||||| | Sbjct 1270 ACGTTTACTTTGAACAAATTAGAGTACTCAAAGCAGGCTATCTTCGCCTGAATACTGTGT 1329 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||||| ||||||||| | |||||||||||||| ||||| Sbjct 1330 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT 1373 >seq295 Length=121342 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | |||||||||| |||| || |||||| | Sbjct 119985 ACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGCTACCTTCGCCTGAATACTGTGT 120044 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||||| |||||||| | |||||||||||||| ||||| Sbjct 120045 GCATGGAATAATGAAATAGGACCT-CGGTTCTATTTTGTTGGTTT 120088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511979277120