Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1109 293 4e-77 seq473 230 4e-58 seq295 228 2e-57 seq758 163 5e-38 >seq1109 Length=1103 Score = 293 bits (324), Expect = 4e-77 Identities = 259/319 (81%), Gaps = 16/319 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC---CGCTTTG----GCGGGTCGCCGGC 72 || |||||||| | |||||||| |||| | || ||| | ||||| | || Sbjct 488 GAACGAGACCTCAGCCTGCTAACTAGCTACGCGGAGCGCACAGCTCCGCGGG----CAGC 433 Query 73 TTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| |||| | | ||||| ||||||||||||||||||||||||||| Sbjct 432 TTCTTAGAGGGACTG-CGGCCGTTTAGGCCGA-GGAAGTTTGAGGCAATAACAGGTCTGT 375 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 374 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATA 315 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| || || ||| | |||||||||| ||| | ||||| |||||||||| |||| Sbjct 314 GCCTGGGTCGACAGGCCCGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATT 255 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 254 GCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 195 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 194 TACGTCCCTGCCCTTTGTA 176 >seq473 Length=32739 Score = 230 bits (254), Expect = 4e-58 Identities = 208/257 (81%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 29936 CTTCTTAGAGGGACAAGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 29879 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 29878 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTTTT--- 29822 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | || Sbjct 29821 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTC 29762 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| | |||||||| Sbjct 29761 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCACGTTGATT 29702 Query 311 ACGTCCCTGCCCTTTGT 327 ||||||||||||||||| Sbjct 29701 ACGTCCCTGCCCTTTGT 29685 >seq295 Length=121342 Score = 228 bits (252), Expect = 2e-57 Identities = 209/258 (81%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| | ||||| || | ||||| |||||| |||||||| Sbjct 120676 CTTCTTAGAGGGACAAGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAATTGGTCTGTG 120733 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| ||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 120734 ATGCTCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGTTTT--- 120790 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||| | | || ||| Sbjct 120791 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGTTGGGGC-TTG 120849 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 120850 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 120909 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 120910 ACGTCCCTGCCCTTTGTA 120927 Score = 150 bits (166), Expect = 3e-34 Identities = 189/260 (73%), Gaps = 41/260 (16%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 68394 CTTCTTAGAGGGACAAGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 68337 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||| ||||||||||||||||||||||||||| || ||| Sbjct 68336 ATGCCCTTAGATATTCTGGGCCGCACGCGCGCTACACTGAAGGA------------ATCT 68289 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC--TGGGGATAGAGCAT 248 | || ||| || ||| |||||| | ||||| | | | Sbjct 68288 C----------AG--CTG------------AACCTCCTTCGTGCTATCGGGATTGGGGCT 68253 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| | | | |||||| ||| || |||||| ||| ||||| ||| |||||||| Sbjct 68252 TGCAATTATTCCCCATGAACGAGTAATTCCCAGTAAGTGCGAGTCATAAGCTCGCGTTGA 68193 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 68192 TTACGTCCCTGCCCTTTGTA 68173 >seq758 Length=6947 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 3303 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 3361 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 3362 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 3419 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 3420 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 3478 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 3479 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947160425984