Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1070 585 8e-165 seq758 399 7e-109 seq355 394 3e-107 seq2384 123 8e-26 seq2830 80.6 8e-13 >seq1070 Length=5571 Score = 585 bits (648), Expect = 8e-165 Identities = 443/512 (87%), Gaps = 10/512 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | |||||| |||| |||||||||||||||||| Sbjct 5053 GTACTCATTCCAATTACCAGACTCGTT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 5111 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5112 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5171 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 5172 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTCACCACCATGGTA 5231 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC- 239 |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 5232 GGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCG 5291 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA-CCAAGGAGC--CCCGAAG--GGC 294 || |||| |||||| ||| |||||| |||||||| || ||| || |||| | || Sbjct 5292 CCAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCCGAGGGGCGAGCCGAGGCTCGC 5351 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTA 353 || || |||| ||||||||| | ||||||| ||||||||| ||| | ||| |||||| Sbjct 5352 GTCGGCCTTTTGACTAATAAATGCGTCCCTTCCGGAAGTCGGGATTTGTTGCACGTATTA 5411 Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||||||| |||||||||| |||| |||| |||||| |||| ||||||||| Sbjct 5412 GCTCTAGAATTACTACGGTTATCCGAGTAG-CGCGTACCATCAAACAAACTATAACTGAT 5470 Query 414 TTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTT 472 |||||||||||||||||||||||| || | ||| | | ||||||| ||||||||||||| Sbjct 5471 TTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTT 5530 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| Sbjct 5531 AATCTTTGAGACAAGCATATGACTACTGGCAG 5562 >seq758 Length=6947 Score = 399 bits (442), Expect = 7e-109 Identities = 409/520 (79%), Gaps = 22/520 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 2225 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 2166 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| | |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 2165 CCTCCCCGAGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 2106 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 2105 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATG 2046 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||| || || |||||||| ||||||||||||||||| ||||||| || | ||| || Sbjct 2045 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCG 1986 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTAT-TA----TGAATCA--CCAAGGAGCCCCGAA 290 | |||| |||| ||| || | ||||| || | || || || || | | Sbjct 1985 GTACAAGACCATACGA-TCTGCATGTTATCTAGAGTTCAACCAATATAACGATCTTGCGA 1927 Query 291 GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAG--TCGGGGTTT-TTAGCA 346 || |||| |||| |||||||| ||| | || ||| || | ||| | ||| Sbjct 1926 TCGC-TTGG-TTTTAGCCTAATAAAAGCACATGTCCCATAAGGTTCATGTTTTAATTGCA 1869 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACG 404 ||||||||||||||||||||||| |||||||| ||| | || || ||| || ||| Sbjct 1868 TGTATTAGCTCTAGAATTACCACAGTTATCCAAGTA--ACTGTTAACGATCTAAGGAACC 1811 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||| ||||||||| || || |||||||| | || | | | |||||||||||| Sbjct 1810 ATAACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATG 1752 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| ||||||||||| Sbjct 1751 CATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 1712 >seq355 Length=1373 Score = 394 bits (436), Expect = 3e-107 Identities = 415/541 (77%), Gaps = 39/541 (7%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 1007 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 948 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 947 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCAGCCTTCCTTGGATGTGGTAGCCGT 888 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||| Sbjct 887 TTCTCCGGCTCCCATTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 828 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG-- 237 |||| | ||||||||||| |||||||| |||||| ||||||| || | |||||| Sbjct 827 AGGCGCAGAACCTACCATCGACAGTTGATATGGCAGACATTTGAAAGATGCGTCGCCGGT 768 Query 238 GCT-CAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACC------AAGGAGCCCCG 288 ||| | | ||||||||| | | | |||| || ||||| || || || Sbjct 767 GCTAGATGACCATGCGATCAGCACAATGATATTCAGAGTCACCAAAGCAAACGATAGACG 708 Query 289 AAGGG-------------CGTTGGTTTTTTATCTAATAAA-----TACACCCCTTCCGAA 330 || || || | | |||| |||||||||| | | || || Sbjct 707 AACGGAACCGTTCGCCACCGATTGGTTTTGATCTAATAAAAGCGGTTCCTGCCATCTCTG 648 Query 331 GTCGG---GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA- 386 | ||| | ||| ||||||||||||||||||||||| || |||||||| ||| ||| Sbjct 647 GCCGGAACACTGTTTTGCATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTA-TAAT 589 Query 387 ---GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATA 443 ||||| ||| || |||| ||||||||||||||||||||||||| ||||||| || | Sbjct 588 GTGGGTACGATCTAAGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-A 530 Query 444 GATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | || | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 TACGGCATGTACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 470 Query 504 G 504 | Sbjct 469 G 469 >seq2384 Length=232 Score = 123 bits (136), Expect = 8e-26 Identities = 113/140 (81%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA----GGTACTATC 395 ||| ||||||||||||||||||| || ||| |||||||| ||| ||| ||||| ||| Sbjct 95 TTTTGCATGTATTAGCTCTAGAAGTATCACAGTTATCCAAGTA-TAATGTGGGTACGATC 153 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 || |||| |||||| |||||||||||||||||| |||| | | | | | || | ||| Sbjct 154 TAAGAAACCATAACTTATTTAATGAGCCATTCGCGGTTTGA-TCTTAATACGGCATGTAC 212 Query 456 TTAGACATGCATGGCTTAAT 475 | |||||||||||||||||| Sbjct 213 TGAGACATGCATGGCTTAAT 232 >seq2830 Length=256 Score = 80.6 bits (88), Expect = 8e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510336895488