Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq136 109 4e-19 >seq136 Length=558006 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| ||||| |||||||| || || || || || |||||||||||| | | ||||| Sbjct 337662 CATGTATTGGCATTCTTTGCAGCCTCCGATGGAATTGTCAATGAGAATCTTGTCGAACGA 337721 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||| |||||| | | ||||| ||||| || || || ||||| |||||||| Sbjct 337722 TTCAGTCAGGAAGTGCAAATCACAGAGGCACGTTGCTTTTATGGTTTCCAAGTTGCCATG 337781 Query 61324 GAGAATGTCCACTCGGAGATGTA 61346 || ||||| || || || ||||| Sbjct 337782 GAAAATGTGCATTCAGAAATGTA 337804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 |||||| | ||||| | |||||||| | | | ||| || || || |||||| | Sbjct 338048 GAAAGCCAACTGGGCACTGAATTGGATAAACCACAAAACCGCCACTTTCCCTGAACGGGT 338107 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTT 61552 | |||||||| | || || || | || |||||||| | |||| ||||| || |||| Sbjct 338108 AATCGCATTTGCTGCCGTGGAAGGCATCTTCTTCAGTGG-TAGTTTCGCCGCCATTTTTT 338166 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 ||||||||||| | || || ||||| || || || ||||||||||| |||| || | | Sbjct 338167 GGTTGAAGAAAAGGGGTCTCATGCCTGGCCTTACATTCAGCAATGAACTGATCTCCAGGG 338226 Query 61613 ACGAGGGCA 61621 | |||| || Sbjct 338227 ATGAGGTCA 338235 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 |||||||| |||||| |||| ||||| ||||| ||| | | || |||||||||||| | Sbjct 338414 ATCGAACAAGAATTTTTGACAGACGCGTTGCCTGTCGAAATGATAGGCATGAATTGTAAA 338473 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT 61830 || |||| || || || ||||||||||| ||||| || | || || ||||| Sbjct 338474 CTTATGTGTCAATACATAGAATTTGTTGCGGACCGACTACTCGTTGAACTGGGT 338527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397547756085920