Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12]
9,036 sequences; 475,911,277 total letters
Query= AAMG01000056.1
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
seq4354 159 7e-37
seq5381 134 3e-29
seq1246 116 7e-24
seq2128 111 3e-22
seq3276 87.8 3e-15
seq112 73.4 8e-11
>seq4354
Length=3557
Score = 159 bits (176), Expect = 7e-37
Identities = 239/330 (72%), Gaps = 16/330 (5%)
Strand=Plus/Minus
Query 9 AAGTTATGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGA 68
|| |||||||||| ||||||||| || || |||||| | |||| |||| |||||
Sbjct 3286 AAATTATGTTTAGAGGATTTTCTTGGAAGTT--CTTACCAACGCTATCCAATTG-CCCGA 3230
Query 69 AGGACGTTCCATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATC---- 123
| | || ||||||| | | ||| | |||||||||||| || ||
Sbjct 3229 AAGCTCTTGG-TACTGTCGGGGTTCAGCTCAAGTTGCGGATTTGCCTGC--AACTCTCTT 3173
Query 124 AACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCC 183
||| ||| || ||||||| |||||||||||| |||| ||||| || ||||
Sbjct 3172 AAC--CTAAACCCTTTAACGTACTATTCCGTCAGTACGCGGTTGTGTCATCACTCCGTCT 3115
Query 184 CCACGTCACCCTCAAATGTAGTAACGGAATACTAACC-GTTTCTGCCATCGGTCTCGCCG 242
|||| |||| || | |||| |||||| ||||| ||||| |||||||| |||
Sbjct 3114 CCACATCACTCTATATACAAGTACGGGAATATTAACCCGTTTC--CCATCGGTAAAGCCT 3057
Query 243 TTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTT 302
|||| ||||| | ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 3056 CGCGGCACTCCCTTAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTT 2997
Query 303 AGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332
||||| |||||||||||||||| | |||||
Sbjct 2996 AGTCTATCGGCGAGGGGGTTTCTCTCCCCC 2967
>seq5381
Length=4748
Score = 134 bits (148), Expect = 3e-29
Identities = 166/226 (73%), Gaps = 1/226 (0%)
Strand=Plus/Minus
Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164
|||||||||| | | |||||| ||||||| ||||||| |||||||||||| ||
Sbjct 3216 GGATTTGCCTACTAAGATCAACTTCTACACCCTTTAACGTACTATTCCGTCAGTACGCAC 3157
Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGGAATACTAACCGTTT 224
| ||||| || ||| || | || | | | | |||| ||||| ||||| ||
Sbjct 3156 GCCTATCACTACTCTGTCACCCCATCGCAGTTATAATAAGTACTGGAATTTTAACCAGTT 3097
Query 225 CTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAG 284
| |||||| | ||| ||||||| ||||| | ||||||| |||||||||||||||
Sbjct 3096 GT-CCATCGACGTAGCCCTTCGGCTTTGCCTTAGGTCCCGACTAACCCTGATCCGATTAT 3038
Query 285 CGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCC 330
|| ||| ||||||||||||||||| ||| | | ||||||| | |||
Sbjct 3037 CGTTGACCAGGAAACCTTAGTCTTCCGGTGTGCGGGTTTCTCGCCC 2992
>seq1246
Length=14010
Score = 116 bits (128), Expect = 7e-24
Identities = 101/123 (82%), Gaps = 3/123 (2%)
Strand=Plus/Minus
Query 209 GGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACT 267
|||||| ||||| | ||| |||||||| | |||||||| | |||||| | |||| ||
Sbjct 12326 GGAATATTAACCTGCTTC--CCATCGGTTACCCCGTTCGGGTTCACCTTAGGCCCCGGCT 12269
Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327
||||||||| ||||||||| |||||||||||||||||||| |||||| | || |||| ||
Sbjct 12268 TACCCTGATTCGATTAGCGTTGATCAGGAAACCTTAGTCTATCGGCGTGCGGATTTCTCA 12209
Query 328 CCC 330
||
Sbjct 12208 TCC 12206
>seq2128
Length=5974
Score = 111 bits (122), Expect = 3e-22
Identities = 157/213 (74%), Gaps = 7/213 (3%)
Strand=Plus/Plus
Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164
|||||||||| | ||| ||||| |||||| ||| ||| | |||||||| | || |
Sbjct 1708 GGATTTGCCTACCGAA-TCAACTCCTACACACTTCAACGAACAATTCCGTCTGTTCGCAG 1766
Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGG-AATACTAACC-GT 222
| | | || |||| |||| || | | | || || |||| |||| ||||| ||
Sbjct 1767 TCCTTACGTTTCTCCGTCACCACATCGCAGT-ATATACAGGTACGGGAATATTAACCCGT 1825
Query 223 TTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATT 282
||| ||||||| ||||| |||||| |||||| | ||||||| ||||||||| ||||
Sbjct 1826 TTC--CCATCGGCTTCGCCTCTCGGCTACACCTTAGGCCCCGACTAACCCTGATCTGATT 1883
Query 283 AGCGGTGATCA-GGAAACCTTAGTCTTTCGGCG 314
||| ||||| ||||||||||||||| |||||
Sbjct 1884 AGCATAGATCAAGGAAACCTTAGTCTTACGGCG 1916
>seq3276
Length=5507
Score = 87.8 bits (96), Expect = 3e-15
Identities = 142/202 (70%), Gaps = 3/202 (1%)
Strand=Plus/Minus
Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCG-GCGGCGTTGTCACTCCTGCGTCCCCAC 187
||||| ||| || |||||||||||||| | | | | ||||| || |||| || |
Sbjct 3183 CTACATACTTATACGTGCTATTCCGTCAGCATCGTAGTGATTTCACTTCTCCGTCACCCC 3124
Query 188 GTCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGG 247
|| | || ||| | ||||| || |||| ||||| | || || |||||
Sbjct 3123 ATCGATATTAATACAGGTACCAGAATATTACTGGTTTT--CCATCAGATTCCCCTTTCGG 3066
Query 248 CTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCT 307
|| ||| | | ||||||| ||||||||||||||| || |||||||||| |||||| |
Sbjct 3065 GTGCTCCTAAGGTCCCGACTAACCCTGATCCGATTAACGTTGATCAGGAACCCTTAGATT 3006
Query 308 TTCGGCGAGGGGGTTTCCCACC 329
|||||||| ||||| ||||
Sbjct 3005 TTCGGCGATAAGGTTTTTCACC 2984
>seq112
Length=422422
Score = 73.4 bits (80), Expect = 8e-11
Identities = 146/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 125 ACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCC 184
||| |||||| ||| |||| ||||||| ||| ||| | | | || || ||||||
Sbjct 159142 ACGCCTACACGCTTGAACCACCTATTCCAACAGATGGCTGACCTAAC-CTTCTCCGTCCC 159200
Query 185 CACGTCACC-CTCAAATGTAGTAACGGAATACTAACC-GTTTCTGCCATCGGTCTCGCCG 242
||| || | || |||| ||| |||||| | ||| ||||| |||||| |||
Sbjct 159201 CACATCGCATCTAAAATCG-GTACAGGAATATTGACCTGTTTC--CCATCGACTACGCTT 159257
Query 243 TTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTT 302
||| || ||||| | |||||| ||||| ||||| | || || ||||||||||
Sbjct 159258 TTCAGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAGGAAACCTT 159317
Query 303 AGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332
| ||||||||||||| | || ||| |||
Sbjct 159318 GGGCTTTCGGCGAGGGAGCTTTTCACTCCC 159347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 959913254400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |