Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq4354 159 7e-37 seq5381 134 3e-29 seq1246 116 7e-24 seq2128 111 3e-22 seq3276 87.8 3e-15 seq112 73.4 8e-11 >seq4354 Length=3557 Score = 159 bits (176), Expect = 7e-37 Identities = 239/330 (72%), Gaps = 16/330 (5%) Strand=Plus/Minus Query 9 AAGTTATGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGA 68 || |||||||||| ||||||||| || || |||||| | |||| |||| ||||| Sbjct 3286 AAATTATGTTTAGAGGATTTTCTTGGAAGTT--CTTACCAACGCTATCCAATTG-CCCGA 3230 Query 69 AGGACGTTCCATACTGTCAATCTCGA-CTCTTTCCGTGGATTTGCCTGCGGAAATC---- 123 | | || ||||||| | | ||| | |||||||||||| || || Sbjct 3229 AAGCTCTTGG-TACTGTCGGGGTTCAGCTCAAGTTGCGGATTTGCCTGC--AACTCTCTT 3173 Query 124 AACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCC 183 ||| ||| || ||||||| |||||||||||| |||| ||||| || |||| Sbjct 3172 AAC--CTAAACCCTTTAACGTACTATTCCGTCAGTACGCGGTTGTGTCATCACTCCGTCT 3115 Query 184 CCACGTCACCCTCAAATGTAGTAACGGAATACTAACC-GTTTCTGCCATCGGTCTCGCCG 242 |||| |||| || | |||| |||||| ||||| ||||| |||||||| ||| Sbjct 3114 CCACATCACTCTATATACAAGTACGGGAATATTAACCCGTTTC--CCATCGGTAAAGCCT 3057 Query 243 TTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTT 302 |||| ||||| | ||||||| |||||||||||||||||| ||||||||||||||| Sbjct 3056 CGCGGCACTCCCTTAGGCCCCGACTAACCCTGATCCGATTAGCGTTGATCAGGAAACCTT 2997 Query 303 AGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332 ||||| |||||||||||||||| | ||||| Sbjct 2996 AGTCTATCGGCGAGGGGGTTTCTCTCCCCC 2967 >seq5381 Length=4748 Score = 134 bits (148), Expect = 3e-29 Identities = 166/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164 |||||||||| | | |||||| ||||||| ||||||| |||||||||||| || Sbjct 3216 GGATTTGCCTACTAAGATCAACTTCTACACCCTTTAACGTACTATTCCGTCAGTACGCAC 3157 Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGGAATACTAACCGTTT 224 | ||||| || ||| || | || | | | | |||| ||||| ||||| || Sbjct 3156 GCCTATCACTACTCTGTCACCCCATCGCAGTTATAATAAGTACTGGAATTTTAACCAGTT 3097 Query 225 CTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAG 284 | |||||| | ||| ||||||| ||||| | ||||||| ||||||||||||||| Sbjct 3096 GT-CCATCGACGTAGCCCTTCGGCTTTGCCTTAGGTCCCGACTAACCCTGATCCGATTAT 3038 Query 285 CGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCC 330 || ||| ||||||||||||||||| ||| | | ||||||| | ||| Sbjct 3037 CGTTGACCAGGAAACCTTAGTCTTCCGGTGTGCGGGTTTCTCGCCC 2992 >seq1246 Length=14010 Score = 116 bits (128), Expect = 7e-24 Identities = 101/123 (82%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 209 GGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACT 267 |||||| ||||| | ||| |||||||| | |||||||| | |||||| | |||| || Sbjct 12326 GGAATATTAACCTGCTTC--CCATCGGTTACCCCGTTCGGGTTCACCTTAGGCCCCGGCT 12269 Query 268 TACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCA 327 ||||||||| ||||||||| |||||||||||||||||||| |||||| | || |||| || Sbjct 12268 TACCCTGATTCGATTAGCGTTGATCAGGAAACCTTAGTCTATCGGCGTGCGGATTTCTCA 12209 Query 328 CCC 330 || Sbjct 12208 TCC 12206 >seq2128 Length=5974 Score = 111 bits (122), Expect = 3e-22 Identities = 157/213 (74%), Gaps = 7/213 (3%) Strand=Plus/Plus Query 105 GGATTTGCCTGCGGAAATCAACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGG 164 |||||||||| | ||| ||||| |||||| ||| ||| | |||||||| | || | Sbjct 1708 GGATTTGCCTACCGAA-TCAACTCCTACACACTTCAACGAACAATTCCGTCTGTTCGCAG 1766 Query 165 CGTTGTCACTCCTGCGTCCCCACGTCACCCTCAAATGTAGTAACGG-AATACTAACC-GT 222 | | | || |||| |||| || | | | || || |||| |||| ||||| || Sbjct 1767 TCCTTACGTTTCTCCGTCACCACATCGCAGT-ATATACAGGTACGGGAATATTAACCCGT 1825 Query 223 TTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATT 282 ||| ||||||| ||||| |||||| |||||| | ||||||| ||||||||| |||| Sbjct 1826 TTC--CCATCGGCTTCGCCTCTCGGCTACACCTTAGGCCCCGACTAACCCTGATCTGATT 1883 Query 283 AGCGGTGATCA-GGAAACCTTAGTCTTTCGGCG 314 ||| ||||| ||||||||||||||| ||||| Sbjct 1884 AGCATAGATCAAGGAAACCTTAGTCTTACGGCG 1916 >seq3276 Length=5507 Score = 87.8 bits (96), Expect = 3e-15 Identities = 142/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCG-GCGGCGTTGTCACTCCTGCGTCCCCAC 187 ||||| ||| || |||||||||||||| | | | | ||||| || |||| || | Sbjct 3183 CTACATACTTATACGTGCTATTCCGTCAGCATCGTAGTGATTTCACTTCTCCGTCACCCC 3124 Query 188 GTCACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGG 247 || | || ||| | ||||| || |||| ||||| | || || ||||| Sbjct 3123 ATCGATATTAATACAGGTACCAGAATATTACTGGTTTT--CCATCAGATTCCCCTTTCGG 3066 Query 248 CTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCT 307 || ||| | | ||||||| ||||||||||||||| || |||||||||| |||||| | Sbjct 3065 GTGCTCCTAAGGTCCCGACTAACCCTGATCCGATTAACGTTGATCAGGAACCCTTAGATT 3006 Query 308 TTCGGCGAGGGGGTTTCCCACC 329 |||||||| ||||| |||| Sbjct 3005 TTCGGCGATAAGGTTTTTCACC 2984 >seq112 Length=422422 Score = 73.4 bits (80), Expect = 8e-11 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 125 ACGTCTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCC 184 ||| |||||| ||| |||| ||||||| ||| ||| | | | || || |||||| Sbjct 159142 ACGCCTACACGCTTGAACCACCTATTCCAACAGATGGCTGACCTAAC-CTTCTCCGTCCC 159200 Query 185 CACGTCACC-CTCAAATGTAGTAACGGAATACTAACC-GTTTCTGCCATCGGTCTCGCCG 242 ||| || | || |||| ||| |||||| | ||| ||||| |||||| ||| Sbjct 159201 CACATCGCATCTAAAATCG-GTACAGGAATATTGACCTGTTTC--CCATCGACTACGCTT 159257 Query 243 TTCGGCTGAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTT 302 ||| || ||||| | |||||| ||||| ||||| | || || |||||||||| Sbjct 159258 TTCAGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAGGAAACCTT 159317 Query 303 AGTCTTTCGGCGAGGGGGTTTCCCACCCCC 332 | ||||||||||||| | || ||| ||| Sbjct 159318 GGGCTTTCGGCGAGGGAGCTTTTCACTCCC 159347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959913254400