Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1210 251 1e-64 seq7200 199 6e-49 seq1296 172 8e-41 seq3241 150 3e-34 >seq1210 Length=14246 Score = 251 bits (278), Expect = 1e-64 Identities = 190/219 (87%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || | ||||||| | ||| |||||||||||| | Sbjct 7377 GTACAAAGGGCAGGGACGTAATCAATGCAAA-TTGATGATTTGCGTTTACTAGGAATT-C 7434 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA-TTTCAAAGATT 119 |||||| |||| || ||||||||| ||||||||| ||||||||| | ||| ||||||| Sbjct 7435 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTATCACGATGCAGGTTTAAAAGATT 7494 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | ||| ||||||||||| | | |||||||||| ||||||||||||||||||||| Sbjct 7495 GCCCAGGCCTCTCGGCCAAGGTAAAA--CTCGTTGAATGCATCAGTGTAGCGCGCGTGCG 7552 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||||||||||||||||||||||||||| ||| Sbjct 7553 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATAGCC 7591 >seq7200 Length=70127 Score = 199 bits (220), Expect = 6e-49 Identities = 205/258 (79%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 4501 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 4444 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| ||||||| |||||| | | |||||| | || Sbjct 4443 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCGATCACGGAGGATTTTCAAGGGGTT 4384 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| ||||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 4383 ACCAATGCCTTTCGGCAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 4325 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||| | |||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 4324 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 4268 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 4267 AGCCGCTTGTCCCTCTAA 4250 Score = 161 bits (178), Expect = 1e-37 Identities = 174/224 (78%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 14812 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 14755 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | ||||||||||| | ||||| |||||| | || || || Sbjct 14754 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTTATGATCCAGTTT 14695 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| |||| | |||| | |||||||||| | ||| |||||||| ||||| Sbjct 14694 GCCCAACCCTTTCGGGCCAGGTTTCCATACTCGTTGAAACCGTCATTGTAGCGCACGTGC 14635 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 ||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 14634 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 14592 >seq1296 Length=6398 Score = 172 bits (190), Expect = 8e-41 Identities = 180/231 (78%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || ||||||| |||| ||||||| || |||||||| |||| | Sbjct 4442 GTACAAACGGCAGGGACATAATCAACGCAAGCT-GATGACTTGCACTTACTAGAAATT-C 4499 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 |||||| |||| | | |||| ||| || ||||||| | ||||| || ||| |||||| Sbjct 4500 CTCGTTCAAGATCCAAAATTCCAAAGAACTATCCCTAACACGACTGGTATTAATAAGATT 4559 Query 120 ACCCGGACCTGTC--GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||| | || || | | | ||| ||| ||| |||| |||||||| Sbjct 4560 ACCCGTACCTTCCCAGGACAGG---AAAAACTTTCTGAGCCAGTCATTGTAACGCGCGTG 4616 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| || || |||| ||||||||||||||||||||||||| |||||||| Sbjct 4617 CGGCCGAGCACGTCTAGGGGCATCACAGACCTGTTATTGCCTTAAACTTCC 4667 >seq3241 Length=4571 Score = 150 bits (166), Expect = 3e-34 Identities = 211/305 (69%), Gaps = 56/305 (18%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||| |||||| || ||||||||| ||| | Sbjct 745 GTACAAAGGGCAGGGACGTAATCAGCGCAGGCT-GATGACCTGCACTTACTAGGGATT-C 802 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||| |||||| |||| ||| | ||||||||||| ||||| || ||| ||||||| Sbjct 803 CTCGTTCAAGACCGCTAATTACAAAGGTCTATCCCCATTACGATAAACTTTGAAAAGATT 862 Query 120 ACCCGGACCTGTCGGCCAAGG--------------------------------------- 140 |||| |||| |||||| ||| Sbjct 863 ACCCAAACCTCTCGGCCCAGGCATACTTACTGGCTTTAGTAACAATATTTATTGTACCAA 922 Query 141 -----------TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | || ||||| ||| | ||||| |||||| |||||||||||||||||| Sbjct 923 GTTTTACCAGCTTGTAAACTCGCTGAGTTCATCATTGTAGCACGCGTGCGGCCCAGAACA 982 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA--TCT 247 || ||||||||||||||||||||||||||| | ||||||| | |||||| |||| | | Sbjct 983 TCAAAGGGCATCACAGACCTGTTATTGCCTAATACTTCCGCTGGCTAAAA-GCCAGTTGT 1041 Query 248 CCCTC 252 ||||| Sbjct 1042 CCCTC 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751934172740