Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1210 264 2e-68 seq7200 192 1e-46 seq1296 170 4e-40 seq3241 168 1e-39 >seq1210 Length=14246 Score = 264 bits (292), Expect = 2e-68 Identities = 211/249 (85%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TCGAATACATTAGCA 129 |||||||| |||||||||||||||||||||||||||| | ||| | ||||| ||||||| Sbjct 8271 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCGTTGAATATATTAGCA 8212 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||||| ||||||| | | ||||||||||||||| | | | ||||||| Sbjct 8211 TGGAATAATGAGATAGGACTTTTT-TACTATTTTGTTGGTTTGC-GTAAAGAGGTAATGA 8154 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||||||||| ||| |||||| | |||||| ||||||||||||||||||||||||||| Sbjct 8153 TTAATAGGGACAGTTGGGGGTATTCGTATTCCATTGTCAGAGGTGAAATTCTTGGATTTT 8094 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | |||||| ||||||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 8093 TGGAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 8035 Query 310 AGTTAGGGG 318 ||||||||| Sbjct 8034 AGTTAGGGG 8026 >seq7200 Length=70127 Score = 192 bits (212), Expect = 1e-46 Identities = 216/283 (76%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||| || | |||||| ||| | | | || ||||||||||| ||||| ||||| | Sbjct 13816 ATGCCTTTAAACGGGTGTCGGGGGCGGACGGCACGTTTACTTTGAACAAATTTGAGTGCT 13875 Query 99 CAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| ||| | ||| | | |||||||||||| ||||||||| | ||||| Sbjct 13876 CAAAGCAGGCCATTGAGCCTGAAAAGTCTTGCATGGAATAATGGAATAGGACTT-CGGTT 13934 Query 157 CTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 ||||||||||||||| | ||| ||| |||||| |||| ||||| || |||||| | | Sbjct 13935 CTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGGGGCATTTG 13993 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 ||| || ||||||||||||||||||| |||| |||||| |||||||| | Sbjct 13994 TATGGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCCAGACAAACTACAGCGAAAGCAT 14053 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | ||||||||||||||||| ||| | || ||||||| || || Sbjct 14054 TTGCCAAGGATGTTTTCATTGATCTG-GAGCGAAAGTCAGAGG 14095 Score = 154 bits (170), Expect = 3e-35 Identities = 185/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| ||||||||||||||||| ||||||| ||| ||| |||||| ||||||| Sbjct 3611 TTTACCTTGAAAAAATTAGAGTGCTCAAAGCGGGCTGATGCCTGAATACTCGTGCATGGA 3670 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||| | |||||||||||||||||||| | | | ||||| |||| Sbjct 3671 ATAATGAAATAGGATCT-CGGTTCTATTTTGTTGGTTTTCTGATCTGAGATAATGGTTAA 3729 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA-TTTATTG 252 ||||| | |||||| | |||| || |||||||||||||||||| || | Sbjct 3730 GAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGACCGTAGCG 3789 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| | ||||||||||| || ||||| |||| ||||||||||| |||||||||| Sbjct 3790 -AGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAAAGT 3847 Query 313 TAGGGG 318 || || Sbjct 3848 CAGAGG 3853 >seq1296 Length=6398 Score = 170 bits (188), Expect = 4e-40 Identities = 120/136 (88%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| ||| ||||| | |||||| ||| |||||||||||||||||| Sbjct 5215 GTAATGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATAGTCAGAGGTGAAATTCTT 5156 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||||||||| | ||||||||| ||||||||| || |||| ||||||||||||||||| Sbjct 5155 GGATTTATTAAGGACTAACTAATGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-A 5097 Query 303 GAACGAAAGTTAGGGG 318 |||||||||||||||| Sbjct 5096 GAACGAAAGTTAGGGG 5081 >seq3241 Length=4571 Score = 168 bits (186), Expect = 1e-39 Identities = 142/173 (82%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 ||||| |||||||||||||| ||||||||| | |||||||||||||||||||||||| Sbjct 1865 GAATATCTTAGCATGGAATAACGGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGG 1807 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 ||| |||||||| || || |||||||| || ||||||||| |||||||||||| Sbjct 1806 ACCAGAGTAATGATAAAAGTGGGCGGTCGGGGGCGTAGGTATTCAATCGTCAGAGGTGAA 1747 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTT 289 |||||| |||| ||||| ||| ||| | |||||| || ||| ||||||| ||| Sbjct 1746 ATTCTTAGATTGATTGAGGACCAACAAATGCGAAGGCATTCGCCAAGGACGTT 1694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915117302528