Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1210 145 8e-33 seq3241 122 9e-26 seq7200 111 2e-22 seq1296 80.6 3e-13 >seq1210 Length=14246 Score = 145 bits (160), Expect = 8e-33 Identities = 143/180 (79%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCA 68 |||||||| |||||||||||||| ||||||||||||| | ||| | ||||| |||| || Sbjct 8271 CTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGCTTATGCCGTTGAATATATTAGCA 8212 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||| | | ||||||||| ||||| | | | |||||| Sbjct 8211 TGGAATAATGAGATAGGACTTTTT-TACTATTTTGTTGGTTTGC-GTAAAGAG-GTAATG 8155 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || |||| ||| ||| |||||| | |||||| ||||||| ||||||||||||||||||| Sbjct 8154 ATTAATAGGGACAGTTGGGGGTATTCGTATTCCATTGTCAGAGGTGAAATTCTTGGATTT 8095 >seq3241 Length=4571 Score = 122 bits (134), Expect = 9e-26 Identities = 110/136 (81%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 56 GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG 115 ||||| ||| |||||||||| ||||||||| | ||||||||||||| |||||||||| Sbjct 1865 GAATATCTTAGCATGGAATAACGGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGG 1807 Query 116 ACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 ||| ||||||||||| || |||||||| || ||||||||| |||| |||||| Sbjct 1806 ACCAGA-GTAATGATAAAAGTGGGCGGTCGGGGGCGTAGGTATTCAATCGTCAGAGGTGA 1748 Query 176 AATTCTTGGATTTATT 191 ||||||| |||| ||| Sbjct 1747 AATTCTTAGATTGATT 1732 >seq7200 Length=70127 Score = 111 bits (122), Expect = 2e-22 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT--GCTCGAATACATTACC 67 || ||||||||||| ||||| ||| | |||||||||||| || || ||| | | | Sbjct 13848 ACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCATTGAGCCTGAAAAGTCTTGC 13907 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||||||||| | |||||||||||||| ||||| | ||| | ||||| Sbjct 13908 ATGGAATAATGGAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAAT 13965 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | || | ||| || |||||| | |||| || | ||||||||||||||||| Sbjct 13966 GGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGCGTTAGAGGTGAAATTCTTGGAT 14024 Score = 89.7 bits (98), Expect = 5e-16 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||| ||||||||||||||| | ||||||| ||| ||| |||||| |||||| Sbjct 3611 TTTACCTTGAAAAAATTAGAGTGCTCAAAGCGGGCTGATGCCTGAATACTCGTGCATGGA 3670 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 ||||| ||||||| | |||||||||||||| ||||| | || | ||||| | | Sbjct 3671 ATAATGAAATAGGATCT-CGGTTCTATTTTGTTGGTTT-TCTGATCTGAGATAATGGTTA 3728 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| | |||||| | |||| || | |||||||||||||||| Sbjct 3729 AGAGGGACGGACGGGGGCATTCGTATCGCTGCGTGAGAGGTGAAATTCTTGGA 3781 >seq1296 Length=6398 Score = 80.6 bits (88), Expect = 3e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| |||| ||| ||| ||||| | |||||| ||| |||| ||||||||||||| Sbjct 5215 GTAATGATTAATAGGGACAGTTGGGGGCATTAGTATTTAATAGTCAGAGGTGAAATTCTT 5156 Query 183 GGATTTATT 191 ||||||||| Sbjct 5155 GGATTTATT 5147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511955181440