Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq112 174 1e-41 seq2044 129 6e-28 seq2001 129 6e-28 seq939 118 1e-24 seq8258 114 1e-23 seq5381 109 5e-22 seq1246 109 5e-22 seq5221 104 2e-20 seq2128 100 3e-19 >seq112 Length=422422 Score = 174 bits (192), Expect = 1e-41 Identities = 132/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 158484 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 158543 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| |||| |||||||||||| ||||||| Sbjct 158544 CTCGACTTGTGGGTCTCGCAGTCAAGCACGCTTTTGCCATTGCACTTTATGGGCGATGTC 158603 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| ||||||||||| Sbjct 158604 CGACCGCCCTAAGCGTACCTTCGTACTCCTCCGTTA 158639 >seq2044 Length=12966 Score = 129 bits (142), Expect = 6e-28 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||||||||||||||||| | ||||||||||||||| |||| |||||| ||||||| Sbjct 9697 TGAGCGATGGCCCTTCCATTCGGGACCACCGGATCACTAACACCTACTTTCGTACCTGCT 9638 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| |||||||| |||||||||| ||||||| ||||||| Sbjct 9637 CGAGCTGTCACTCTTGCAGTCAAGCTCCCTTATGCGTTTGCACT 9594 >seq2001 Length=3286380 Score = 129 bits (142), Expect = 6e-28 Identities = 92/106 (87%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| ||||||||||||||||||| | || |||||| ||| Sbjct 2269650 GTTGAGCGATGGCCCTTCCACGCAGAACCACCGGATCACTAAGTCCGACTTTCGTCTCTG 2269591 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||||| ||||||||||||||||||| |||||||| ||||||| Sbjct 2269590 CTCGAGCTGTCACTCTCGCAGTCAAGCTCCCTTATGCCTTTGCACT 2269545 >seq939 Length=11213 Score = 118 bits (130), Expect = 1e-24 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||| Sbjct 10372 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATATCCTACTTTCGTACCTGA 10313 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| ||| |||| ||||||||| ||| ||| |||||||| | | |||| | || Sbjct 10312 TCGACTTGTCGGTCTCACAGTCAAGCTCCCTTTTGCTATTGCACTCATCGCACGGTTACC 10253 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | || ||||| | ||||||||| Sbjct 10252 AAGCGTACTGAGGGAACCTTTGAAAGCCTCCGTTA 10218 >seq8258 Length=2548 Score = 114 bits (126), Expect = 1e-23 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | | |||||||||||||||||||| |||||| ||| Sbjct 2057 GTTGAGCGATGGCCCTTCCATACGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1998 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||| | ||||| | ||||||||| || |||| ||||||| |||| | | ||| || Sbjct 1997 CTCTATCCGTCGATATCGCAGTCAGGCAGGCTTTTGCCATTACACTCATCGACTGATTTC 1938 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || || | ||| ||||| | | ||||||||| Sbjct 1937 CGTCCAGTCTGAGCCTACCTTTGCACACCTCCGTTA 1902 >seq5381 Length=4748 Score = 109 bits (120), Expect = 5e-22 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 ||||||||||||| |||||| |||||||||||||||||||| ||| |||| |||||| Sbjct 4112 TTGAGCGATGGCCTTTCCATACAGAACCACCGGATCACTATATCCTAGTTTCCTACCTGC 4053 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| || |||| ||||||||| ||||||| |||||||| | |||| | || Sbjct 4052 TCGACTTGTTTGTCTCACAGTCAAGCACCCTTATGCTATTGCACTCTACGCACGGTTACC 3993 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||| | | || ||||| | ||||||||| Sbjct 3992 AACCGGGCTGAGGGTACCTTTGAAAGCCTCCGTTA 3958 >seq1246 Length=14010 Score = 109 bits (120), Expect = 5e-22 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | ||||||||||||||||||| || |||| ||||| Sbjct 13252 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATGCTCTAGTTTCCTACCTGA 13193 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| ||||| |||| ||||||||| ||||| ||||| |||| Sbjct 13192 TCGACCCGTCGGTCTCACAGTCAAGCACCCTTATACCATTACACT 13148 >seq5221 Length=2213 Score = 104 bits (114), Expect = 2e-20 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||||| || |||||| |||| Sbjct 1911 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATATCCGTCTTTCGACCCTGA 1852 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || |||| ||||||||| |||||||| |||||||| Sbjct 1851 TCGACTTGTTGGTCTCACAGTCAAGCATGCTTATGCTATTGCACT 1807 >seq2128 Length=5974 Score = 100 bits (110), Expect = 3e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||| | || |||||| |||| Sbjct 804 TTGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTTTAGCCGACTTTCGTCCCTGA 863 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| ||||| |||| ||||||||| ||||| | | | | || | || ||| || Sbjct 864 TCGACCCGTCGGTCTCCCAGTCAAGCTCCCTTATACTAATACGCTCTACGCATGATTACC 923 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||| || | || ||||| | ||||||||| Sbjct 924 GACCATGCTGAGGGAACCTTTGCAAGCCTCCGTTA 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473558542832