Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq3574 170 5e-38 seq112 118 3e-22 >seq3574 Length=6226 Score = 170 bits (188), Expect = 5e-38 Identities = 414/618 (67%), Gaps = 7/618 (1%) Strand=Plus/Plus Query 37704 AAGA-AGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAAC 37762 |||| |||||| || ||| |||||||| |||| |||| |||| | |||||| | Sbjct 2689 AAGACAGACCGCACCGGCACCGGCACGCGCAGCCTGTTTGGCCACCAGATGCGCTTCGAT 2748 Query 37763 TTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTAT 37822 | | || || || ||| | || || ||||| || |||| | |||||| Sbjct 2749 CTGAACGAAGGCTTCCCGGTGGTCACCACGAAGAAGGTGCACCTGAAAAGCATCATCCTG 2808 Query 37823 GAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTG 37882 |||||||| ||||| | |||||| | |||| ||||| ||||||| |||||| Sbjct 2809 GAACTGCTGTGGTTCCTGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGTG 2868 Query 37883 ACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAA 37942 || ||| | || ||||| | | ||||| || || ||| | ||||||| ||| Sbjct 2869 CGCATCTGGAACGAATGGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCAG 2928 Query 37943 TGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAA 38002 |||||| ||| | ||||| |||||||||||| || ||| || ||| Sbjct 2929 TGGCGCAGCTGGCCCACGCCCGACGGCGGCCACATCGACCAGATGGCCGAGGTGGT-GAA 2987 Query 38003 G-AGATCA-AACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAG 38060 | || ||| ||| || ||| |||| || || | | || ||||| ||||| || || | Sbjct 2988 GCAGCTCAGAACCAACCCCG-ATTCGCGGCGCATCATCGTCAGCGCCTGGAACGTGGCCG 3046 Query 38061 AATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACG 38120 || || || ||||| ||| ||| || ||| | ||| ||||||||||| ||| | | Sbjct 3047 AACTGCACAAGATGGCCCTGGTGCCCTGCCATGCCTTCTTCCAGTTCTATGTGGCCGAAG 3106 Query 38121 GCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTA 38180 | || || ||| | | |||||| || || | || | || |||| || | Sbjct 3107 GGCGCCTGAGCTGCCAGCTCTACCAGCGCAGCGCCGACATTTTCCTGGGCGTGCCCTTCA 3166 Query 38181 ACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCG 38240 ||||||| |||||||||||| ||||||| ||| | || || || ||||| ||| | || | Sbjct 3167 ACATCGCCAGCTACGCGCTGCTGACGCACATGCTGGCGCAGCAGTGCGATTTGCAGGTGG 3226 Query 38241 GTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA-AGCG 38299 | || |||| | || || |||||| ||| | ||||| | ||| | ||||| ||| Sbjct 3227 GCGATTTCATCTGGACAGGTGGCGACTGCCACATCTACAACGACCATTTCGAACAGTGCG 3286 Query 38300 AAACTGCAGCTGACGCGC 38317 ||||||||||||||| Sbjct 3287 -CGCTGCAGCTGACGCGC 3303 >seq112 Length=422422 Score = 118 bits (130), Expect = 3e-22 Identities = 337/511 (66%), Gaps = 8/511 (2%) Strand=Plus/Minus Query 37700 GAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTC 37759 |||||| ||||| || || |||||| | || || |||||| | ||| | || ||| Sbjct 129455 GAAAAATCCGACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGGCAGATGCGTTTC 129396 Query 37760 AACTTA--CAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCA 37817 || | |||| || |||||| | ||| || || || |||| || || |||| Sbjct 129395 GACCTGGCCAAG--GGCTTTCCGGTGACGACCACCAAGAAGCTGCACCTCAAGTCAATCA 129338 Query 37818 TTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATG 37877 || | ||| || | ||||| | ||||||| || ||| || || | |||||| | | Sbjct 129337 TTCACGAATTGTTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACG 129278 Query 37878 GCGTGACG-ATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGC 37936 | || ||| || ||||||| |||||| ||||| ||||||| ||||||||| | |||||| Sbjct 129277 GAGT-ACGCATCTGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGC 129219 Query 37937 GCGCAATGGCGCTCG-TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGT 37995 ||| ||||| ||| ||| | | | ||||| ||||||||||||||| | Sbjct 129218 AAGCAGTGGCG-TCGCTGGGAAACACCGGACGGTCGGGTCATCGACCAGATCGCGCAACT 129160 Query 37996 TGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGT 38055 | | | | || || ||| | || ||||||| | || || ||||| Sbjct 129159 CATTCACGGCCTGAAGAACAACCCGGACTCCCGCCGGCACATCGTTTCGGCCTGGAACCC 129100 Query 38056 AGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGC 38115 | || | || | ||| || ||||| || |||| | || |||||||||||||| Sbjct 129099 CGGCGATGTCGAGCACATGGCCCTACCGCCCTGCCATTGCCTGTTCCAGTTCTATGTCGC 129040 Query 38116 CAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCC 38175 | ||||| || |||| ||| | | |||||| || || | ||| | || | || Sbjct 129039 CGACGGCAGGCTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTTCTGGGCGTACC 128980 Query 38176 GTTTAACATCGCGAGCTACGCGCTGTTGACG 38206 || ||||| || |||||| ||||| ||| Sbjct 128979 CTTCAACATTGCCTCCTACGCCCTGTTTACG 128949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130625982001400