Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1514 187 2e-42 seq1813 170 2e-37 seq2057 152 4e-32 >seq1514 Length=8380 Score = 187 bits (206), Expect = 2e-42 Identities = 403/599 (67%), Gaps = 8/599 (1%) Strand=Plus/Minus Query 66032 GCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATG 66091 |||| ||||||||||| ||||| || | ||||| || || || || || |||| Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 66092 GTGCCCAAATTCTGTTGATTACTCTTGCGA-TTGCATGCATCCTTGTACATCATGTACGG 66150 ||||| | || | ||| ||||| || ||| ||| |||||| || | | |||||| || Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTT-CGAGTTGGCTGCATCTTTAAATAGCATGTAGGG 3951 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 ||||| || || | |||| || | || | ||| | | | || || ||||| Sbjct 3950 TGTGCCAGTTTCCATTTGGCTTTCCAATATTTCAAACCATAAGTCTTGGGCTTTTACCGT 3891 Query 66211 ---ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 |||||| | |||| | ||||||| || ||| || | ||| || | || || Sbjct 3890 TTTACGTACTT---TTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCC 3834 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 | |||| || | ||| || | || || ||||| ||||||||| | | | | Sbjct 3833 ATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATC 3774 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| || || |||||||| |||||||||||| | |||||| || ||||| || || || Sbjct 3773 TTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACG 3714 Query 66388 TTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 || || | ||||| ||||| ||| | | | |||||| | ||||||||||| Sbjct 3713 CATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCA 3654 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || |||| || ||||| || |||||| | || ||||| || || || || || ||||| Sbjct 3653 AGGCTCCAAATATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCG 3594 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 |||| || ||||| || |||||||| |||| | ||||| || ||||||| || || Sbjct 3593 AGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACC 3534 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | || || || |||| || || || | | || ||||||||||| |||| Sbjct 3533 TTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCG 3475 >seq1813 Length=735787 Score = 170 bits (188), Expect = 2e-37 Identities = 150/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 61190 AACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGA 61249 |||||||||| || |||||||||||||| || || || ||||| ||||||||||||| Sbjct 439006 AACATTTCATCTCCCACGTGTTGGCGTTCTTCGCTGCGTCTGACGGCATCGTCAATGAGA 439065 Query 61250 ATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCT 61309 | | |||| | ||| ||||||||||| ||| |||| || || || ||||| |||| Sbjct 439066 ACCTGGTGGAGAGGTTCAGCCAGGAGGTGCAGGTGCCGGAAGCTCGCTGCTTCTATGGCT 439125 Query 61310 TCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACA 61369 ||||||| ||||||||||| |||||||| || ||||||||| | |||||| | || |||| Sbjct 439126 TCCAGATCGCCATGGAGAACGTCCACTCAGAAATGTACAGTCTGCTCATCAACACCTACA 439185 Query 61370 TCAGGGA 61376 ||| ||| Sbjct 439186 TCAAGGA 439192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| || |||| || ||| |||||| || | ||||||||| ||| | || Sbjct 438138 GAACCCCTGCTGAAAGACAACCCTTCTCGTTTTGTGATCTTCCCCATCCAGTTCCATGAC 438197 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| |||||||||||||| |||||||| | ||||| || ||| | Sbjct 438198 ATTTGGCAGATGTACAAGAAGGCGGAAGCTTCATTCTGGACTGCAGAGGAAGTGGATCTT 438257 Query 61147 TCCAA 61151 || || Sbjct 438258 TCAAA 438262 >seq2057 Length=842785 Score = 152 bits (168), Expect = 4e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || || || || ||||| || || || | ||| ||||||| | | ||||| ||||| Sbjct 607754 AGAGCGAGGGAAGCAAGGTTACACACTGCCACCTCATCAGGAGAGCTGTACTCCACAATC 607813 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| ||||| ||||| |||||||| | |||||||| || |||||| ||| Sbjct 607814 TCAGTGCAGAGATTGCTGCACTTGATGGTGCCAAGGTTCTGTTGGTTGGACTTGCGGTTG 607873 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 |||||||| ||||| | |||||| |||||||| || || || ||||||| |||||||||| Sbjct 607874 CATGCATCTTTGTAGAGCATGTAGGGAGTGCCTGTTTCCACCTGGGACTGAATGATGGCG 607933 Query 66185 TGCCAAAGAGCGCGTGCCTTCACC 66208 | ||| || | ||||||||| Sbjct 607934 TACCACAGTTGTTGGGCCTTCACC 607957 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 ||| ||| |||| ||||| || | || |||| |||| || ||||| || | ||| ||||| Sbjct 605919 CCAGGCAAAGAAGTGCATGGACGTTAGTTTTCCATAGTTTGGCTCAGCAATATGAATATT 605978 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 || |||||| || || |||||| || ||||| || ||||| || |||||||| | Sbjct 605979 CAGACTCTGACTTTGGTCAATGTAAGCTCCTCGATCAGCTGCCATCTCTATGATACG-CT 606037 Query 65272 TCCC-GATATCTCCCAGACGGTCTTGTACAG 65301 || ||||||||||| || |||||||| || Sbjct 606038 TCTGAGATATCTCCCACACAGTCTTGTAAAG 606068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397524217327040