Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq6557 165 3e-36 seq1897 105 2e-18 >seq6557 Length=877522 Score = 165 bits (182), Expect = 3e-36 Identities = 282/404 (70%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 2523 CCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCT 2582 ||| ||| | | ||||| || || ||| ||| |||||||||||| ||||| || Sbjct 516993 CCCCATCGTTTCCATCGAGGACGGCATGTCGGAAGCCGACTGGGACGGCTGGAAGCTGCT 516934 Query 2583 TACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACAC 2642 || || || || || | ||||| | || || |||||| | ||||| || ||||| Sbjct 516933 CACCGACCGCCTGGGCAAGACGGTTCAGATCGTCGGCGACGACGTGTTCGTGACCAACAC 516874 Query 2643 TGCTTACCTTGAAA-AAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGTT 2700 | | ||| || |||| || |||| | | ||||| ||||| ||||| | Sbjct 516873 C-CGGATCTTCAAGGAAGGCATCA-AGAAGGGTATCGGCAACTCGATCCTGATCAAGATC 516816 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGA 2760 ||||| ||||| || ||| | ||||| |||| |||| |||| ||||| || ||||| Sbjct 516815 AACCAGATCGGCACCTTGTCCGAAACCTTTGCCGCTGTCGAGATGGCCAAGCGCGCTGGC 516756 Query 2761 TACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATT 2820 || || ||||| |||| |||||||| |||||||| || || || |||||||| || Sbjct 516755 TATACCGCAGTGATATCGCACCGTTCCGGTGAAACCGAGGACAGCACCATCGCTGACATC 516696 Query 2821 GCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATT 2880 || || | || || || || || ||||| ||||| |||| ||| | ||||| || Sbjct 516695 GCCGTGGGCCTCAATGCCGGGCAGATCAAGACCGGTTCGCTGTCGCGTTCCGACCGCATC 516636 Query 2881 GCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGA 2924 || || |||||||||||||| || ||||| || | || ||||| Sbjct 516635 GCCAAGTACAACCAATTGCTGCGCATCGAGGAAGATCTCGGTGA 516592 >seq1897 Length=7050 Score = 105 bits (116), Expect = 2e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 2779 CACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCT 2838 || || ||||| ||||||||||| || || || || | || |||||| || || Sbjct 4615 CATCGCTCAGGCGAAACTGAAGACAGCACCATTGCCGACCTGGCCGTTGCATTAAATACT 4556 Query 2839 GGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTG 2898 || ||||| || || || ||| ||||| | |||||||| || ||||||||||||||| Sbjct 4555 GGCCAAATAAAAACTGGCTCAGCTTCACGCTCCGACCGTATGGCCAAATACAACCAATTG 4496 Query 2899 CTTCGTATCGAAGACCAACTTGGTGA 2924 ||||||||||||||| || | ||||| Sbjct 4495 CTTCGTATCGAAGACGAATTGGGTGA 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156021656689584