Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq5144 125 1e-23 seq2001 111 2e-19 seq866 86.0 9e-12 seq862 84.2 3e-11 seq112 84.2 3e-11 >seq5144 Length=4231 Score = 125 bits (138), Expect = 1e-23 Identities = 258/381 (68%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 162469 ACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTAT 162528 ||||| ||||| ||||| || || ||||| | || ||||| |||||||| || | || Sbjct 1659 ACCAGCGAGCTGTATGGCCTGGTGCAGGAAATTCCGCAGAAGGAAACCACGCCCTTCTAC 1600 Query 162529 CCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGG 162588 || || ||| || | || || || || ||||| | |||||||| || ||| | Sbjct 1599 CCGCGCAGCCCCTACGCCGTGGCCAAGCTGTATGGCTACTGGATCACGGTGAATTACCGC 1540 Query 162589 GAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGA 162648 || ||||| | | |||||| | ||| || || ||||| ||||||||| | | | Sbjct 1539 GAGGCCTATGGCCTGTATGCCTGCAACGGCATCCTGTTCAACCACGAAAGCCCGCTGCGT 1480 Query 162649 GGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTC 162708 || ||||||||||| || ||||||||| ||| ||| || | || || || || Sbjct 1479 GGCGAGACGTTCGTGACGCGCAAGATCACCCGCGCCGTGGCGCGCATCGCCCACGGCCTG 1420 Query 162709 CAA-AGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGA 162767 ||| | || || | || || ||||| | ||| || || ||||| || || || Sbjct 1419 CAAGACTG-CCTGTACCTGGGCAACCTGAGCGCCAAGCGCGATTGGGGCCATGCGCGTGA 1361 Query 162768 CTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGC 162827 |||||| || || |||| ||||||| || ||||| | | || |||| ||| || Sbjct 1360 CTACGTTGAAGCGCAGTGGCTGATGCTGCAACAAGACCACGCCGAAGATTTCGTGGTCTG 1301 Query 162828 AACTGGTGAGCAGTATTCTGT 162848 || || | ||||||||| || Sbjct 1300 TACCGGCGTGCAGTATTCGGT 1280 >seq2001 Length=3286380 Score = 111 bits (122), Expect = 2e-19 Identities = 223/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 162511 GAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGG 162570 ||||||||||| | ||||| || ||| || || | || || | |||| | |||| Sbjct 2680519 GAAACCACTCCGTTTTATCCTCGCAGCCCCTACGGCGCAGCGAAGGTCTATGCCTACTGG 2680460 Query 162571 ATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAAT 162630 |||| |||||| ||||| |||| | | ||||| | ||||||||| |||||| Sbjct 2680459 ATCACGGTGAACTACCGGGAAGCCTATAATCTGTTTGCCTGCAACGGTATTCTCTTCAAT 2680400 Query 162631 CACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGT-C 162689 || || | || | || || |||||||| || ||||||||| || || || | | Sbjct 2680399 CATGAGTCGCCGCGGCGCGGCGAAACGTTCGTGACCCGCAAGATC-ACCCAGGCTGCTGC 2680341 Query 162690 CCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGA 162749 || || | |||| |||| | ||||| || || |||||| ||||| || || Sbjct 2680340 GCGCATCAAGCTGGGCATCCAGAAGGATCTCTTCCTCGGTAACCTCGATGCCAAGCGCGA 2680281 Query 162750 CTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCC 162809 |||||| ||| ||||| | || || |||||| ||||||| ||| || ||||| Sbjct 2680280 CTGGGGCTTCGCTGGCGACTATATCGAAGCGATGTGGATGATGCTACAGGCCGACAAGCC 2680221 Query 162810 AGATGATTATGTGATCGCAACTGGTGAG 162837 ||||| ||||| | || ||||| ||| Sbjct 2680220 GGATGACTATGTTGTGGCGACTGGGGAG 2680193 >seq866 Length=17912 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 14089 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 14148 Query 142853 CCGTTATTCTCCACCAA 142869 |||| || ||||||||| Sbjct 14149 CCGTCATCCTCCACCAA 14165 >seq862 Length=13664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 10627 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 10568 Query 142853 CCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 10567 CCGTCATCCTCCACCA 10552 >seq112 Length=422422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 160895 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 160836 Query 142853 CCGTTATTCTCCACCA 142868 |||| || |||||||| Sbjct 160835 CCGTCATCCTCCACCA 160820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691381099683360