Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq60966 407 6e-111 seq61169 235 2e-59 seq36707 125 3e-26 >seq60966 Length=1577 Score = 407 bits (450), Expect = 6e-111 Identities = 258/280 (92%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1577 CCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC 1518 Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG-----AGGGTGCACCATCGACC 523 || ||||||||||||||||||| ||||| | || | | |||||| |||||||| Sbjct 1517 GTACGCGTAATGAAAGTGAACGTAGGTGAGGGCCATTTTTTTTATGGTGCATCATCGACC 1458 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 GATCCTGATGTTTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 1398 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1397 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTC 1338 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||| ||||||||||||||||||| Sbjct 1337 TGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 1298 >seq61169 Length=1943 Score = 235 bits (260), Expect = 2e-59 Identities = 159/178 (89%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||| | ||||| |||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1549 TGTAAAGTACTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAAT 1608 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||| ||||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 1609 TCCATCTAAGGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 1668 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 ||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||| || Sbjct 1669 TGAAAAGAACTTTGAAAAGAGAGTGAAAAAGTACGTGAAATTGTTGAAAGGGAAGGGC 1726 Score = 84.2 bits (92), Expect = 9e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||||||||||||||||||| | || |||||||||| ||||||||||||||||||||| Sbjct 1885 AGGATGCTGGCGTAATGGTTAAATGCCGCCCGTCTTGAAACACGGACCAAGGAGTCTAA 1943 >seq36707 Length=7948 Score = 125 bits (138), Expect = 3e-26 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 5401 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 5342 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | |||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 5341 ATAACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 5282 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 5281 AGAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 5248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078682240700