Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq55918 149 2e-33 seq17415 105 2e-20 seq11108 105 2e-20 seq3744 96.9 1e-17 seq60966 89.7 2e-15 >seq55918 Length=2248 Score = 149 bits (164), Expect = 2e-33 Identities = 139/174 (80%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG-TCACTAATTAGATGA 417 ||| || || ||||||||| || ||||| |||||| ||||| | | | ||| ||| || Sbjct 1353 AGTGGACAGAGACAGTGGGTATTTCGTTCATCCATACATGCCGGATGAGCAAT-AGACGA 1411 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||| |||||||||| |||||||| ||||| | ||||||||||| |||| ||| | Sbjct 1412 CGAGTTATTTGGCTACATTAAGAGATTCATAATCTCTCCCGCCGTTGACCCACGCGCATT 1471 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||||||||| || ||| ||||||||||||||||| ||||||| ||| ||||| Sbjct 1472 TGAATTTCTTGACGTTGGCATTCAGAGCACTGGGCCGAAATCATATTATGTCAA 1525 >seq17415 Length=3640 Score = 105 bits (116), Expect = 2e-20 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||| || || ||||||||| || |||| ||| || ||||| | || ||| | Sbjct 1320 AGTCGACAGAGACAGTGGGTATTCCGTTCATCTATCCATGCCTGATGAGCATAAGACACC 1379 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 | | |||||||||| ||||| || ||||| || ||||| ||||| |||| |||| | Sbjct 1380 GGGTTATTTGGCTACATTAAGGGAATCATAATTTCTCCCACCGTTGACCCACGCTCATAT 1439 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||||| || | ||| ||||||||||||||||| |||||| |||| Sbjct 1440 GAATTTGTTGATGTTGGCATTCAGAGCACTGGGCCGAAATCGCATT 1485 >seq11108 Length=1541 Score = 105 bits (116), Expect = 2e-20 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||| || || ||||||||| || |||| ||| || ||||| | || ||| | Sbjct 363 AGTCGACAGAGACAGTGGGTATTCCGTTCATCTATCCATGCCTGATGAGCATAAGACACC 422 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 | | |||||||||| ||||| || ||||| || ||||| ||||| |||| |||| | Sbjct 423 GGGTTATTTGGCTACATTAAGGGAATCATAATTTCTCCCACCGTTGACCCACGCTCATAT 482 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||||| || | ||| ||||||||||||||||| |||||| |||| Sbjct 483 GAATTTGTTGATGTTGGCATTCAGAGCACTGGGCCGAAATCGCATT 528 >seq3744 Length=21761 Score = 96.9 bits (106), Expect = 1e-17 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 ||||||||| || || |||||||||||||||| | ||| |||| |||||||||||| Sbjct 2122 TAGAGTCAATCTTAATAGGGTCTTCTTTCCCCAGTAATTATTTCAAGTCCGTTCCCTTGG 2063 Query 342 CTGTGGTTTCGCTAGATAGTAGATAG 367 ||||| ||||| |||||||||||||| Sbjct 2062 CTGTGTTTTCGGTAGATAGTAGATAG 2037 >seq60966 Length=1577 Score = 89.7 bits (98), Expect = 2e-15 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634195431232