Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephydra_20gracilis_20[genbank_20GCA_5F001014675.1_202015-05-28] 61,434 sequences; 410,872,512 total letters Query= NC_033068.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq33187 253 3e-64 >seq33187 Length=9873 Score = 253 bits (280), Expect = 3e-64 Identities = 280/371 (75%), Gaps = 19/371 (5%) Strand=Plus/Minus Query 1018 CCATGGGATTATGAGCAGTATATCAACTCTATGGACAGCCCCAGCAAGCGAAGATTTTAT 1077 || ||| |||||| |||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 6906 CCTTGGAGTTATGAAGAGTATATCGACTCTATGGACAGCTCCAGCAAACGAGGATTTTAA 6847 Query 1078 CAGCA-AGTTGTCGACCAGATTCGAAATGGACGAAAAATCACGAGTGGCATCACTCCTTT 1136 ||| | || | ||| | || | |||| ||||| ||| |||||| |||||||||||| Sbjct 6846 GAGCGGATTTATAGACAA-ATACAAAATAAACGAACTATCCCGAGTGACATCACTCCTTT 6788 Query 1137 CACTAAGCTTGAGAAAATGGGATCAAATAAGTACAAAGCTCCAAGACTTATCCAAGCACG 1196 ||| ||||| || ||||| ||| |||| ||||||||||||| |||| Sbjct 6787 CACAAAGCTCGAAAAAATTGGACCAAACAAGTACAAAGCTC---------------CACG 6743 Query 1197 CCATCCAACATTCAATATCGCTTATGGATGCTACATTAAACCACTCG-AGCGTGCTAACA 1255 |||||| ||||| || | ||||||||| | || ||||||||||| | | ||| || || Sbjct 6742 CCATCCCACATTTAACTTGGCTTATGGACGTTAAATTAAACCACTAGAAACGT-CTCTCA 6684 Query 1256 AACACAAGCTACAATTCGGCAAAGGCACTTATGACGAGATTGGAGCCAAAATACACAAGC 1315 || | |||| ||||||||| | ||||||||||| |||||||||||| | |||| | Sbjct 6683 AATTGGACATACACTTCGGCAAATGAACTTATGACGACATTGGAGCCAAAGTTCACAGAC 6624 Query 1316 TTTCTCGAAAATACCAATACTACACTGAAGGAGACCATAAGACTTTTGACGCACACGTCA 1375 || || | ||| ||||||||||||| |||||||||| || ||||| || ||||||| Sbjct 6623 TTGCTAAACGTTACAAATACTACACTGAGGGAGACCATAGTACCTTTGATGCTCACGTCA 6564 Query 1376 CCCGAGACATG 1386 | | ||| ||| Sbjct 6563 CTCCAGAGATG 6553 Score = 123 bits (136), Expect = 4e-25 Identities = 278/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 1513 ACGCGCATGTCAGGAGACGTTGATACCGGCTATGGAAACAGCATTATCAACTACTACATA 1572 || |||||||| ||||| ||||||||| || ||||||| | | ||||||| || || Sbjct 5073 ACCCGCATGTCCGGAGATGTTGATACCAGCCTTGGAAACGGGCTCATCAACTCTTATAT- 5015 Query 1573 CTCAAGAAATTACTTGGAATACTACGGATTAAA-GGCGACGCGATTGTTAATGGAGACGA 1631 || | | || | ||| | | || || ||||| || || || |||||||| Sbjct 5014 CTTACGTAAAGCCCTGGCTGAAAGCAATTTGGTCGGAGACGCCATCGTCAACGGAGACGA 4955 Query 1632 CTTTATACTCTTTACGTCCAGTAAACTGGATAGTGAGCAATGTAAACGCAT-ATTACGAG 1690 || ||||| || || | || | | || | | || | || | | ||||| Sbjct 4954 TTTCATACTTTTCACATATAGGCCAATTCCTA-TCAACACCTTTGCGGCGTTACTACGAA 4896 Query 1691 AATTTAATATGGAAACGGAGATGGGAGAGAGCACAAACAATATCCATCACATTGAGTTTT 1750 || ||||||||||||| ||||||||| |||||| | ||||| ||| |||||||||||| Sbjct 4895 CATATAATATGGAAACGAAGATGGGAGCTAGCACAGATAATATTCATGACATTGAGTTTT 4836 Query 1751 GCCGCTGTCGCCTTATTTATCACCCTGATGGCCATCCGACAATGGCTTTCGATCCAGACC 1810 | || |||| ||| | ||||| ||||| |||||||||||||| |||||||| | | Sbjct 4835 GTCGTTGTCATCTTGTATATCATCCTGACCATCATCCGACAATGGCCTTCGATCCGGCAC 4776 Query 1811 GTCTACA-GAAGATATACGGTGCAACCTACCTCCCGTGGACGGACGAACAATATACCGGG 1869 | | | | | || ||||| || || ||| |||| || || | ||||| | | Sbjct 4775 G-CAATATGGCGACGTACGGGGCGACGCCCCTACCGTTTACAGAGGCCCAATAAAATACG 4717 Query 1870 TATCTTCAGGTAATTCATCATGCAAATTTCATGATAAATCAAAACTCACC 1919 ||| ||||| |||| ||| ||| | |||||| ||||||||| Sbjct 4716 TATTGCAAGGTAGTTCAACATTGTGATTATACCATAAATATAAACTCACC 4667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8097111269808