Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2112 152 9e-35 seq6224 138 2e-30 seq2101 100 5e-19 seq5779 91.5 3e-16 >seq2112 Length=2039691 Score = 152 bits (168), Expect = 9e-35 Identities = 176/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATG 131 |||||||||||||||||||| || |||||| | || | ||| | |||| ||||| Sbjct 829247 TTTACTTTGAAAAAATTAGAATGCTCAAAGGATGCTTGATTGTTTTAATAGTCGTGCATG 829306 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 | ||||||||||||| || || |||||||| | ||||| | | | |||||||| Sbjct 829307 AATTAATAGAATAGGAAGT-CGTCTCTATTTTTAT--TTTCTGAAATCATCTTAATGATT 829363 Query 192 AATAGGGA---TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| |||||||||| | |||||||| | |||||||||||||||||| | Sbjct 829364 AATAGGGACGATAGTCGGGGGCATTTGTATTCAAACGATAGAGGTGAAATTCTTGGACTG 829423 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 || | ||| ||| ||||| ||||| ||||| ||||||||||||||||| Sbjct 829424 TTTAATGACAAACGACTGCTAAAGCAGAAGCCAAGAATGTTTTCATTAATCAG 829476 >seq6224 Length=138335 Score = 138 bits (152), Expect = 2e-30 Identities = 108/128 (84%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||||||||||||||||| |||||| | |||||||| | ||||||||||||||||| Sbjct 29074 TAATGATTAATAGGGATAGACGGGGGCATTTGTATTCAAACGACAGAGGTGAAATTCTTG 29015 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 || ||||||| ||||||||||||||| || ||||| |||||||||||||||| | Sbjct 29014 GACCATGTGAAGACCAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AG 28956 Query 304 AACGAAAG 311 |||||||| Sbjct 28955 AACGAAAG 28948 >seq2101 Length=568393 Score = 100 bits (110), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATG 131 ||||||||||||||||| || || | |||||| || | ||| ||||| ||||| Sbjct 502280 TTTACTTTGAAAAAATTGGACTGCTGAAAGCAAGCTTGACCTCTTGAATATTCGTGCATG 502221 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAG-GACCGCCGTAATGAT 190 ||||||||||| |||| | | ||||||||||||||||| | | | || | ||||||| Sbjct 502220 GAATAATAGAAAAGGAAG-CTGTTTCTATTTTGTTGGTTTTTGGAAAACGACTTAATGAT 502162 Query 191 TAATAGGGATAGT 203 ||||||||||||| Sbjct 502161 TAATAGGGATAGT 502149 >seq5779 Length=1669438 Score = 91.5 bits (100), Expect = 3e-16 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 ||||||||||||||||||| |||||||| || |||||| ||||| || ||||| || Sbjct 1343800 CAGAGGTGAAATTCTTGGACCGTTTGAAGACAAAATACTGCTAAAGCATTTGCCAAGAAT 1343741 Query 287 GTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||| | ||||||||||||| || Sbjct 1343740 GTTTTAATTAATTA-AGAACGAAAGTTAGAGG 1343710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915136860352