Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6659 122 4e-25 seq458 98.7 4e-18 >seq6659 Length=55174 Score = 122 bits (134), Expect = 4e-25 Identities = 116/146 (79%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||| || |||||| |||| || |||||||| | || |||| |||||||| Sbjct 25956 AGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGTGAGGTAAACTCCTACTAAGGCTAAATA 26015 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | || ||||||||||| | ||||| |||||| |||| ||||||| |||||| || Sbjct 26016 TGCCCCCAAGACCGATAGCAAATAAGTACAGTGATGGAAACTTGAAAAGAACTTTG--AA 26073 Query 161 GAGAGTTAAAAAGCACGTGAAATTGT 186 ||||||| || || |||||||| ||| Sbjct 26074 GAGAGTT-AAGAGTACGTGAAACTGT 26098 >seq458 Length=832386 Score = 98.7 bits (108), Expect = 4e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||| |||||| ||| |||| ||| ||||| ||| |||| |||| ||||| Sbjct 418254 GACCCGAAAGACGGTGAAGTATACCTGGTCAGGTTGAAGTCAGGAGAAATTCTGATGGAG 418195 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||| |||| ||||||||||||| ||| | ||||||||||||||| Sbjct 418194 GACCATAGCGATTCTAACGTGCAAATCGATTGTCGGAGCTGGGTATAGGGGCGA 418141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079852016450