Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5779 141 1e-31 seq4445 107 3e-21 seq2891 100 5e-19 seq2780 78.8 1e-12 seq224 77.0 5e-12 >seq5779 Length=1669438 Score = 141 bits (156), Expect = 1e-31 Identities = 105/123 (85%), Gaps = 5/123 (4%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||| | ||||||||||||||| |||||||||||||||||||| || Sbjct 1343377 CTATTTAACAGGACAGAGTCTCGTTCGTTATCAGAATTAACCAGACAAATCAC-----CA 1343431 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 ||||||||||||||| |||||||||||| ||||||||||||||||||||||| || | Sbjct 1343432 ACTAAGAACGGCCATACACCACCACCCACCAAATCAAGAAAGAGCTATCAATCTATCATT 1343491 Query 262 CCT 264 ||| Sbjct 1343492 CCT 1343494 >seq4445 Length=3841633 Score = 107 bits (118), Expect = 3e-21 Identities = 163/224 (73%), Gaps = 15/224 (7%) Strand=Plus/Plus Query 33 CGGCCCAGAACATCTAAGGGCATCACAGACCT----GTTATTGCCTCAAACTTCCAT-TG 87 |||||||||||||||||||||||||||||||| |||||||| |||| | ||| | Sbjct 650873 CGGCCCAGAACATCTAAGGGCATCACAGACCTCTACGTTATTGC-TCAATGT--CATGTA 650929 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT---AGTCGATGGGGCT- 143 || || ||||||| || | | | | ||||| | | | | | || | Sbjct 650930 ACTAATTATCACCAGTCCCTAAAATACGAAAATC--CAACCCTGCAACTGGGTTGGATTT 650987 Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT-CCACCAA 202 |||| |||| | || || ||||| |||||||||||||||| |||||||| ||| ||| Sbjct 650988 ATTTCCCAGGAAGAAGTGTCATTCGTAATCGGAATTAACCAGATAAATCACTACCAACAA 651047 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 | | |||||||||||||||||| | | |||||||||||||| Sbjct 651048 TTGACAACGGCCATGCACCACCAGCAACCAAATCAAGAAAGAGC 651091 >seq2891 Length=453445 Score = 100 bits (110), Expect = 5e-19 Identities = 81/99 (82%), Gaps = 12/99 (12%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||||||||||| |||||||||| ||||||||||| | ||| |||||| Sbjct 275781 TCTCGTTCGTTATCAGAATTAACCA---------CTCCACCAACTTATAAC---CATGCA 275828 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||||||||||||||||||| Sbjct 275829 CCACCACCCACCAAATCAAGAAAGAGCTATCAATCTGTC 275867 >seq2780 Length=863960 Score = 78.8 bits (86), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 7/82 (9%) Strand=Plus/Minus Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||| ||||||||||| |||| ||||||||| || |||||||||||| ||||| Sbjct 790190 TTAACTAGACAAATCACGCCACAAACTAAGAA--TACA-CCACCACCACCCA---AATCA 790137 Query 238 AG-AAAGAGCTATCAATCTGTC 258 || ||||||||||||||||||| Sbjct 790136 AGAAAAGAGCTATCAATCTGTC 790115 >seq224 Length=2482856 Score = 77.0 bits (84), Expect = 5e-12 Identities = 72/93 (77%), Gaps = 9/93 (10%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||||||||||||| || |||| ||||||||||| ||||||||||||||| Sbjct 643248 TCTCGTTCGTTATTTGACATAACTTGACAAATCACT---------AAGAACGGCCATGCA 643298 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||| ||| || |||||| |||||| Sbjct 643299 CCACCACCCACCAAATGAAAAAAGAGTTATCAA 643331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796746746619