Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6659 242 1e-61 seq49 152 2e-34 seq1635 140 1e-30 seq5868 100 9e-19 seq6607 93.3 1e-16 seq380 91.5 5e-16 seq502 77.0 1e-11 >seq6659 Length=55174 Score = 242 bits (268), Expect = 1e-61 Identities = 146/154 (95%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 18964 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTCCCAAGTCCGTTCCCT 18905 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18904 TGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 18845 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||| || ||| |||||||||||||||||| Sbjct 18844 CGCGTCAGTAGTTATCTGACGAGGCATTTGGCTA 18811 >seq49 Length=16374 Score = 152 bits (168), Expect = 2e-34 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||| |||||||||| ||||||||||| |||||| ||| ||||||||||| Sbjct 4312 TTAAGAGAGTCAGAGTTACTCCCACCGTTTACCCGTGCTTGGACGAACCTCTTCACTTTG 4253 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 | ||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 4252 ATATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATCACTCTCTG 4204 >seq1635 Length=773204 Score = 140 bits (154), Expect = 1e-30 Identities = 80/82 (98%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 684748 CCAAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 684807 Query 384 GTTAATCCATTCATGCGCGTCA 405 |||||||||||||||||||||| Sbjct 684808 GTTAATCCATTCATGCGCGTCA 684829 >seq5868 Length=215742 Score = 100 bits (110), Expect = 9e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| Sbjct 199435 TTAAGAGAGTCATAGTTACTCCCTCCGTTTACCCGCGCTTGGACGAACCTCTTCACTTTG 199376 Query 495 ACATTCAGAG 504 ||||| |||| Sbjct 199375 ACATTTAGAG 199366 >seq6607 Length=124502 Score = 93.3 bits (102), Expect = 1e-16 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCAC 537 |||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 46857 TGAACCTCTTAACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCATTAACATCAC 46798 Query 538 TTTCTG 543 | |||| Sbjct 46797 TCTCTG 46792 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/77 (82%), Gaps = 7/77 (9%) Strand=Plus/Minus Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||| ||||| ||||||||| |||| |||| ||||| |||||||||||| Sbjct 49150 CCTTGGCTGCGGTTTTGCTAGATAG-------GGACTGTGGAAATCTTGTTAATCCATTC 49098 Query 396 ATGCGCGTCACTAATTA 412 |||||||||| || ||| Sbjct 49097 ATGCGCGTCAGTAGTTA 49081 >seq380 Length=1113684 Score = 91.5 bits (100), Expect = 5e-16 Identities = 81/102 (79%), Gaps = 11/102 (11%) Strand=Plus/Minus Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA-------- 503 || ||| ||||||||||||||||| ||| |||||| |||||||| |||| Sbjct 418145 ACGCCCACCGTTTACCCGCGCTTGTACGAACCTCTTCATTTTGACATGCAGACACATTCA 418086 Query 504 --GCACTGGGCAGAAATCACATTGCGTCAACATCACT-TTCT 542 ||||||||||||||||||||||||| ||||||||| |||| Sbjct 418085 TTGCACTGGGCAGAAATCACATTGCGTTAACATCACTCTTCT 418044 >seq502 Length=903661 Score = 77.0 bits (84), Expect = 1e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCT 542 |||| |||||||||||||||||||||| ||||| ||||||||| | ||||||| ||| Sbjct 680654 TTCATTTTGACATTCAGAGCACTGGGCGGAAATGACATTGCGTTAGCATCACTCTCT 680598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635087187552