Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq3079 100 9e-19 seq3580 78.8 3e-12 >seq3079 Length=459424 Score = 100 bits (110), Expect = 9e-19 Identities = 120/159 (75%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 286 CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGC 345 |||||| |||| | |||| |||||||||| || | || | ||||| | ||||| || Sbjct 297112 CCGAAGC-CGTTTGGTTTTGATCTAATAAAAGCATCTCTCCGTGAGTCGAGATTTTTCGC 297054 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA--GGTACTAT-CAAATAAA 402 |||||||||||| ||||||||| | |||||||| ||||| | || || | | || | Sbjct 297053 ATGTATTAGCTCAAGAATTACCTCAGTTATCCA---AGTAACTGCTAACATTCTAGTAGA 296997 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 | |||||||||||||||||||| |||||||| || Sbjct 296996 TTAGGTGTGATTTAATGAGCCATTCGCGGTTTCACTATA 296958 >seq3580 Length=377753 Score = 78.8 bits (86), Expect = 3e-12 Identities = 53/58 (91%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 |||||||||| | | ||||||||| |||||||||||||||| |||||||||||||||| Sbjct 332587 TGGTAGCCGTGTTTAAGGCTCCCT-TCCGGAATCGAACCCTGATTCCCCGTTACCCGT 332531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510295797504