Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4046 233 2e-56 seq891 95.1 1e-14 >seq4046 Length=337920 Score = 233 bits (258), Expect = 2e-56 Identities = 620/941 (66%), Gaps = 16/941 (2%) Strand=Plus/Minus Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 ||||| || || ||||||||||| || | ||| ||||| |||| || ||||| ||||| Sbjct 122157 GGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTC 122098 Query 66067 GGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCA 66126 ||||||||||| ||| ||||| || | |||||| || || || | || || Sbjct 122097 TGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACA 122038 Query 66127 TGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTG 66186 || |||||||||| |||||||||||| |||||||||| |||||| ||||| || || | Sbjct 122037 GGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATA 121978 Query 66187 CCAAAGAGC-GC-GTGCCTTCACCGT----ACGTACCGCCCTACCTTTGCGTTCGTAATG 66240 || ||||| || | || || || || | | || ||| |||| ||| || | Sbjct 121977 CC--AGAGCTGCTGAGCTTTTACAGTCTTCAAGACGCGTCCTTCCTT----TTCATATTT 121924 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 || || || ||||| || ||||| || || || | || ||| || || Sbjct 121923 CTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGG 121864 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 |||||| || |||||| ||||| ||||| | ||| || |||||||| ||||| Sbjct 121863 ACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCA 121804 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 | |||||||| ||||| | |||| | |||||| | || ||||| || ||| || Sbjct 121803 CATAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATC 121744 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 | |||||| || || || ||||||| ||||| |||||||| ||||| | || | Sbjct 121743 CAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCT 121684 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 || || || || || || || | || || || || || | || ||| || | Sbjct 121683 CTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAAT 121624 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTG 66600 | ||||||||| | || ||||| ||| | ||| || || | || || ||| ||| Sbjct 121623 CAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTG 121564 Query 66601 AACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCG 66660 |||||| || || || || ||||| | ||| ||||| ||| || | || || Sbjct 121563 AACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504 Query 66661 GAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGG 66720 | | || || || || || || || || || ||| |||| || ||| ||||| Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444 Query 66721 TTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAA--AGTAATGGCGAGAC 66778 ||| || ||||| || ||||| || | |||||| |||| ||| |||| | Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384 Query 66779 ATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACAT 66838 | | || ||| || || ||| ||| ||||| | || || || || || | ||| | Sbjct 121383 AAG--ATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACT 121326 Query 66839 CGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAG 66898 | ||||| | | || || | || |||| | | ||||| | || | |||| Sbjct 121325 CTCATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTA 121266 Query 66899 CGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || |||||||| | || || ||| ||| | |||||| Sbjct 121265 CGCTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATC 121225 >seq891 Length=807508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| || ||||| || || || || |||||| || || || |||||| |||| | Sbjct 738214 TGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGT 738273 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 |||| | | | || |||||||| | ||| || | | || ||||| || || | Sbjct 738274 GGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAG 738333 Query 61517 GTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 | | || ||| ||| | |||| ||||| || || ||||||||||| || || || ||| Sbjct 738334 GAATCTTCTTCTCTGG-TAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATG 738392 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 || || || || ||||| || || | || || | |||||||| Sbjct 738393 CCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGG 738436 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 61036 TTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGC 61095 || || |||||| | || || || || | ||||| ||| ||||| ||||||||| | Sbjct 735591 TTTCAGGAGAATTCCCGCCGCTTTGTTATATTCCCGATCCAGTATCCTGATATTTGGAGG 735650 Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAA 61151 |||||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 735651 ATGTACAAGAAGGCTGAGGCCAGCTTCTGGACGGCCGAAGAGGTCGATTTATCAAA 735706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534571861360