Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq43985 210 2e-49 >seq43985 Length=4878 Score = 210 bits (232), Expect = 2e-49 Identities = 743/1162 (64%), Gaps = 66/1162 (6%) Strand=Plus/Minus Query 65707 TTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATT-AAGTT 65765 || |||||| | || | |||| || | || || || || ||||| || |||| ||| Sbjct 2095 TTCACAGCTAGCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAG 2036 Query 65766 CACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTT 65825 | | |||| ||||||||||| || || ||| |||| |||| ||| || | ||||| Sbjct 2035 CGCA-GCCTGCTCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTT 1977 Query 65826 GAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGG 65884 | | ||||| || || || ||||| | ||||| || | ||| ||||| || | || Sbjct 1976 GTATGCCAATGCCAATAGGGCGATGTCTGAAATTAGA-CTTCTTTGCCTCGGGCAATGGA 1918 Query 65885 TAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCA-CAT-GCACGATACGTC 65942 || | ||| || ||||| || ||| | ||| ||||| || ||| | | | | || Sbjct 1917 TAATGATTTATGTCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACCTCCTTC 1858 Query 65943 GCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGG 66002 || | | ||||| | ||| || || || |||||| | Sbjct 1857 --AAACGCTTAAAATCGTACGTTTTT------TCTGGTGTA---------ACAAACATAT 1815 Query 66003 GAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAA 66062 || |||| ||||| | || || ||||| | || || || || | |||||| || | Sbjct 1814 TGAGTGCAATCGATGCTAAATTACAAACAGCCACTTCATCTGGTGCTGAATACTCAACTA 1755 Query 66063 TTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGAT 66122 |||| || || | |||||| || || ||||| | ||| |||||||||||||| | || Sbjct 1754 TTTCTGTACATAAATTACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTTTCTAT 1695 Query 66123 TGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGG 66182 | |||||||||||||||| ||| || || ||||| ||||| ||||| || ||||| |||| Sbjct 1694 TACATGCATCCTTGTACAGCATATATGGTGTGCCTGTCTCTACTTGCGATTCAATAATGG 1635 Query 66183 CGTGCCAAAGAGCGCGTGCCTTCAC---CGTACGTACCGCCCTACCT-TTGCGTTCGTAA 66238 | ||||||| |||| || || | || || || | | | | |||| || || Sbjct 1634 CAAACCAAAGACTTTGTGCTTTTACTTTCTTA-TTAGCG-CGTCCGTCTTGC--TCATAT 1579 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | || | | ||| || || |||||||| || || | |||||||||||| Sbjct 1578 TTAGTATATAATTTTTCAAATTCATCGCCCCATACCTCATGCAAGCCGGGACACTTGTGT 1519 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 |||||||| ||||||||||| ||| ||| ||||| |||||| ||||| || ||| Sbjct 1518 GGACACATAAGCGACCAATCTTCATTAGCTTCAACACGTTTCATAAAAAGATCTGGAATC 1459 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || | || || || | ||| | |||| ||||| || |||| |||||| || Sbjct 1458 CATAATGCATAAAATAAATCTCTAGCTCTATGCTCTTCTGTGCCAGTATTTTTCTTTAAA 1399 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || | || ||||| || || |||||||||||||| | Sbjct 1398 TCCAAAAATTCAAATATATCTGCATGCCATGGTTCTANNNNNNNNNNNNNNNNNNNNNNN 1339 Query 66479 -----------------------------CGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 ||||| || || ||||| || || || || | Sbjct 1338 NNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGTTTACCACCGCCTTGATCTACATAACGTG 1279 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGT 66569 | ||||| ||||| || | |||||| ||||| | || || ||| ||||||| ||||| Sbjct 1278 CTACATTATTGAATACCCTCAACATTGGTACCAAACCATTCGATGTGCCATTTGTGCCCG 1219 Query 66570 CGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCT 66629 | || | | ||| ||| ||||| || ||||| || ||||||||||| || | | Sbjct 1218 CAATTGCTGTACCTTTTGCTCGTATGCAATGTACATTGAGTCCAATACCACCAGCTGATT 1159 Query 66630 TCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTC---ACCCT 66686 | || || |||||| | ||| ||||||||| ||||| || || | || Sbjct 1158 TGGAAATTAAAGCACATTGATGTGCTGAGGTGAATATGCCATCAATTGAATCGGAAACC- 1100 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 || |||| ||| | ||||| || || |||| || || || | ||| || | Sbjct 1099 --ATAGTCAAAAGGAAACATGATGATAGCTGTGGTTGTCTAGTAGCTGCAGCGAAAAGTG 1042 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 | |||| || || ||||| ||| | || | ||||||| || || || ||||||| Sbjct 1041 TTGGTGACGCATGTGTAAAATAACGTTCTGAGAGCAAATTGTATGTTTCAATAACAGCAT 982 Query 66807 CAATGTTTTCGCCATGAATCCC 66828 |||| | || || || || || Sbjct 981 CAATATCCTCTCCGTGTATACC 960 Score = 181 bits (200), Expect = 8e-41 Identities = 287/404 (71%), Gaps = 8/404 (2%) Strand=Plus/Minus Query 65157 CATAGAAATGCATCGATGATAATTTTGC-ATAATTCGGCTCGGCCACATGCATATTCAAC 65215 |||| ||||| || |||| ||| |||| |||||| || || || ||||| ||||| ||| Sbjct 2683 CATAAAAATGTATAGATG-TAAGCTTGCCATAATTTGGTTCAGCTACATGAATATTAAAC 2625 Query 65216 GACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTC-C 65274 || ||||| ||||||||| | |||||||| || ||||| | || || | | || | Sbjct 2624 GATTGACTTTGATCGATGAATGCGCCACGATCGGCTGCCATCTTCATTGTA-GTCTTCAC 2566 Query 65275 CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTC 65334 |||||||||||| || || ||||| || ||||| | |||| || ||||| | Sbjct 2565 CGATATCTCCCAAACTGTTTTGTAAAGTTCACGTATTTTTGTTGGTATGGATTCAATACC 2506 Query 65335 CTGGACTGAACCACGACGTGCAATAATGC--GATTACGCATCGACTCTGACCACAAACCC 65392 || | ||||||||| | || ||||| |||| | ||| || |||||||||| Sbjct 2505 TTGTATTGAACCACGGCTTGTTATAATTTTAGATTTCATATCT--TCATCCCACAAACCC 2448 Query 65393 AAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACA 65452 || || | |||| | | ||| ||| |||| | ||||| || || || || ||||| Sbjct 2447 AATTCAGTGAGATCGCGTAACAAATGATGATTAACAACTTGAAATTCACCCGAAAGTACG 2388 Query 65453 CGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGG 65512 || || ||| || || || ||| ||||||||| |||||| | ||||| | |||||| Sbjct 2387 CGTCGATTATAAATATTTGAAGTGTAGGGTTCAAACGATTCATTATTGCCCATAATTTGT 2328 Query 65513 GCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 ||||| |||||||| ||||| || || | | || ||||| || Sbjct 2327 GCAGTTGATGCAGTGGGCATAGGGGCTAAAAGTAAAGAGTTGCG 2284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396894272073440