Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq133036 87.8 3e-12 seq12640 87.8 3e-12 >seq133036 Length=1169 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 196197 TGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCA 196256 |||| || || |||||| ||| ||||||| ||||| |||||| |||| |||||||| | Sbjct 5 TGGTTACTACCAAGAAAACTCATTTGCGTTCAATCATCCATGAATTGCTTTGGTTCCTTA 64 Query 196257 ACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGG 196316 | || || || ||||||||||||||| | || || || || || ||| || |||| Sbjct 65 AAGGTGAAACTAACATCAAGTACCTGGAAGATAATGGGGTTAAGATTTGGCGGGAATGGG 124 Query 196317 CGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCGTGAATGG 196369 | | || ||| | || || || || || || || || ||| ||| ||| Sbjct 125 CAGATGAGAATGGTGATCTAGGTCCAGTCTATGGCAAACAATGGGTTGACTGG 177 >seq12640 Length=196862 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 194282 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 194223 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 194222 CCGTTCCGCCA 194212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770201401443120