Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq139046 266 2e-66 seq28727 109 3e-19 >seq139046 Length=22897 Score = 266 bits (294), Expect = 2e-66 Identities = 963/1476 (65%), Gaps = 53/1476 (4%) Strand=Plus/Minus Query 38622 CCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGGCAG 38681 || ||||| || || || ||||| || ||||| |||| ||| || ||||||||| Sbjct 22407 CCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGGCAG 22348 Query 38682 CTCTTTGTGATCTGCTGCGCGTTT--GGCTGGGTCAATAAAGGCTCCCGGCTG-CGCCGC 38738 ||||| | | || | ||| || ||| | ||||| || |||| || || Sbjct 22347 -TCTTTCGGTT-TGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCA-GGCTATCGTCGT 22291 Query 38739 TTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGT 38798 || || |||| |||| |||| | |||||||| ||||| || || | | | ||||| Sbjct 22290 TTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGG 22231 Query 38799 GTTGCCCT-GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGT 38855 | | | | | |||| | ||| ||| |||||| ||||| ||||| || || || Sbjct 22230 ATAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATACTCAGGC 22174 Query 38856 GCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAAACGC 38915 || |||||| ||||||||||| ||| || || |||||||| || | ||| || | Sbjct 22173 GCAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGA-TACAGAA 22115 Query 38916 ACACCCATG-CTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCC 38974 | |||| ||| |||| || ||| |||| || ||| ||||| | |||||| Sbjct 22114 AAGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGTCC 22056 Query 38975 GGAGGA-TGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCC 39033 | | |||| | |||||||||||| | | || | ||||| |||||| || ||| Sbjct 22055 CCGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCT 21996 Query 39034 ACTGTGCTGTGGTGGATGAATATCACGAGCATGCCACAGAT--GCACTTTACACCACGAT 39091 ||| || | | ||||||| |||||| || ||| | | ||||| || ||| || Sbjct 21995 CCTGCGCGATTATCGATGAATTTCACGAACA--CCAGACCTCAGCACTGTATGACACTAT 21938 Query 39092 GCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTA 39151 ||| ||||| |||||||| || || ||||| | | | |||||| || || ||||| Sbjct 21937 GCTCACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTA 21878 Query 39152 CAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCTCAACGGCTC 39211 | |||| || ||||||||| |||||| ||| | | || |||||| || | Sbjct 21877 CCTGCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGAC 21818 Query 39212 GGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGAC 39271 ||||| | || || || || | || | | | ||||| | || || ||||| Sbjct 21817 TGTGCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGAC 21758 Query 39272 CGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATT 39331 || ||| | ||| ||||| || || ||| | |||||||| || | || || | Sbjct 21757 AGATCCGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGA--T 21700 Query 39332 TTTGTTAAGTCAGCAGCAGCGTGCGAA------AAATAACGCCCGTCTGGCA--AACGTC 39383 ||| || || ||| |||| || || |||| | | | | || ||||| Sbjct 21699 TTTCTTGAG--AGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGT- 21645 Query 39384 TTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTG 39443 | |||||||| || | || ||| | | | | | ||||||| |||| Sbjct 21644 -TCAAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTT 21586 Query 39444 AGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCA-GCCGTG 39502 | |||| | | ||||| |||||| | ||||| | || || ||| | || | | || Sbjct 21585 AACTGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTT 21526 Query 39503 CATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTATAC 39562 ||| |||||| ||| | ||||||||||| || ||||||||||||| || || | Sbjct 21525 AATTTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTG 21467 Query 39563 CCGCGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTA 39622 ||||| || ||||||||| |||||||| | | ||||| ||||||| ||||| Sbjct 21466 GCGCGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTA 21407 Query 39623 TGACACGGTGTACAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAA 39682 ||||||| | ||| || || || || || | || || ||| |||||| Sbjct 21406 TGACACGATATACGATGTGGATAATAA---------GCGTATGGCTGAGCGCCTTCAGAC 21356 Query 39683 ATGGGTGGAAATGGGCGTTCT-GACTGTTACCGCTGGTGCGGAGGTGGATTATCGCTACA 39741 ||| | | | || ||| || | || | || || || || || ||||| | Sbjct 21355 TTGGCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGGGCTA 21297 Query 39742 TCCTCGAGGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACC 39801 | || | | ||| | | | ||| | || ||| || | || | || |||| Sbjct 21296 TTCTGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCAGCGATAGACC 21237 Query 39802 CCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAAGACCTGAACCCCA-TCACC 39860 | ||| || |||| |||| || | || | ||| | || || ||| ||| |||| Sbjct 21236 CTAGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACG-AGGGCTTAACGCCAGTCACT 21178 Query 39861 ATCATTCAGAAC-TACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGA 39919 |||||||| ||| | || | | ||||| || || ||||| || || ||||| || || || Sbjct 21177 ATCATTCAAAACTTTCAGC-ATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGA 21119 Query 39920 ATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTAGT 39979 | | || || || ||||| ||||| || || |||||||| | |||||| |||| || | Sbjct 21118 AGCCGGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGAT 21059 Query 39980 CGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAGCAGGCGGAAAA 40039 ||| ||| | |||||||||| || ||||| || | ||| || |||||| ||| || || Sbjct 21058 CGGTAAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAA 20999 Query 40040 TAAAATCGATGGTGCAGTTGCACTGATTATGGCGGT 40075 ||||| || ||||| || ||| |||| ||||| || Sbjct 20998 CAAAATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 >seq28727 Length=1947 Score = 109 bits (120), Expect = 3e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24465 GCCTTTAATACTGAGCAGTTGACCCTGATCTTCCTGCAGTATGGTGAGCTTTCCGCCCTT 24524 |||||| || ||| || || ||||| |||||||||| ||||||||||| ||||| || Sbjct 981 GCCTTTGATGGTGAACAACTGGCCCTGGTCTTCCTGCATGATGGTGAGCTTGCCGCCTTT 1040 Query 24525 GTTAACCCACATTGGGGTTTCTGTTGTGTCCTCTTCTGACGCTTTACCGCGCGGCGTCGG 24584 | || |||| || ||||| || |||||||||||| | |||||||||||| || || Sbjct 1041 GCCCACGTACATAGGTGTTTCGGTAAGGTCCTCTTCTGAGGTTTTACCGCGCGGAGTAGG 1100 Query 24585 AGTACTGTACTGCAGCTTGTGTTTAATTTTGACGCGCTTCTCTTC 24629 | | ||| ||||||||| | | |||||||||||||| Sbjct 1101 GGCGGAGAACTTCAGCTTGTGAGACAGCATCACGCGCTTCTCTTC 1145 Score = 109 bits (120), Expect = 3e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 64055 GCCTTTAATACTGAGCAGTTGACCCTGATCTTCCTGCAGTATGGTGAGCTTTCCGCCCTT 64114 |||||| || ||| || || ||||| |||||||||| ||||||||||| ||||| || Sbjct 981 GCCTTTGATGGTGAACAACTGGCCCTGGTCTTCCTGCATGATGGTGAGCTTGCCGCCTTT 1040 Query 64115 GTTAACCCACATTGGGGTTTCTGTTGTGTCCTCTTCTGACGCTTTACCGCGCGGCGTCGG 64174 | || |||| || ||||| || |||||||||||| | |||||||||||| || || Sbjct 1041 GCCCACGTACATAGGTGTTTCGGTAAGGTCCTCTTCTGAGGTTTTACCGCGCGGAGTAGG 1100 Query 64175 AGTACTGTACTGCAGCTTGTGTTTAATTTTGACGCGCTTCTCTTC 64219 | | ||| ||||||||| | | |||||||||||||| Sbjct 1101 GGCGGAGAACTTCAGCTTGTGAGACAGCATCACGCGCTTCTCTTC 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247055822803216