Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq76293 93.3 4e-15 >seq76293 Length=3964 Score = 93.3 bits (102), Expect = 4e-15 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 8141 AATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGA-GCATCTTGTAATCGGGCTG 8199 |||| ||| |||||||||||| |||| | || |||| | || | || || || || Sbjct 2933 AATTTTTAAAAGAAGTAAATGATCATGGTATTGAGTTGGATGTAT-TGGTCATTGGACTA 2991 Query 8200 AGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCATGGAAG 8259 | ||| || ||| |||| | || | ||| ||| || || | ||||| ||| | Sbjct 2992 AAAGGCAAAGAACGAGAGGTGAAGATAGAAGGAAGATATTTTTCTTTAATGTCCTGGGAT 3051 Query 8260 CTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTCTCTTC 8319 || |||||||| ||| |||| || ||||||| ||| ||| ||||| || || | ||| Sbjct 3052 CTAAGAGATTATTTCATAATAACCGAATATTCAATCAAAACTCATTTTGTTCCCTTATTC 3111 Query 8320 TCCGGATTAACTATGGCAGATGA 8342 ||||||||||||||| ||||| Sbjct 3112 AACGGATTAACTATGGCTGATGA 3134 Score = 84.2 bits (92), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 8419 GCAAATCATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCT 8478 || ||||||||||||||| | |||||||| ||||| ||| | || ||| || | Sbjct 3253 GCTAATCATATAGATTATCAAAAATGGAACAACCACCAACGTCTCAAGTCAACATATGCA 3312 Query 8479 GTCTTCACTGTCATGGGTCAGTTTCTAGGATATCCAAGC-CTCATAACAAGAACACATGA 8537 | || | || ||||| || || || || || ||||| || || ||| | |||||||| Sbjct 3313 ATTTTTAAGGTTATGGGACAATT-CTCGGTTA-CCAAGAACTGATTACACGTACACATGA 3370 Query 8538 GTTCTTTGAAAAAAGCTTGATCTATTA 8564 ||||||||||||||||| ||| || || Sbjct 3371 GTTCTTTGAAAAAAGCTGGATATACTA 3397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41763148455456