Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_033068.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq78316 95.1 2e-16 seq11939 77.0 5e-11 >seq78316 Length=1658 Score = 95.1 bits (104), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 1488 AGGTGAAAATTACAGCGTGGTCGGAACGCGCATGTCAGGAGACGTTGATACCGGCTATGG 1547 ||||||| |||| |||| ||||| | |||||||| ||||||||||||||| ||| Sbjct 1637 AGGTGAATTTTACCGCGTCAATGGAACAAGAATGTCAGGCGACGTTGATACCGGCCTTGG 1578 Query 1548 AAACAGCATTATCAACTACTACATACTCAAGAAATTACTT-GGAATACTACGGATTAAAG 1606 ||||||| | |||||||| || || ||| | | | ||| | || | || || Sbjct 1577 AAACAGCCTCATCAACTATTATATCCTC-CGCCACTCCTTACGCGCGCTCGGCATACGAG 1519 Query 1607 GCGACGCGATTGTTAATGGAGACGACTTTATACTCTTTACG 1647 ||||||| || ||||||||||||||||| || || || ||| Sbjct 1518 GCGACGCCATCGTTAATGGAGACGACTTCATTCTTTTCACG 1478 Score = 87.8 bits (96), Expect = 3e-14 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1695 TAATATGGAAACGGAGATGGGAGAGAGCACAAACAATATCCATCACATTGAGTTTTGCCG 1754 ||||||||| || | | |||| || || || | ||||| || | ||||||||||| || Sbjct 1374 TAATATGGACACTGTGGTGGGCGAAAGTACTACTAATATTCACCGTATTGAGTTTTGTCG 1315 Query 1755 CTGTCGCCTTATTTATCACCCTGATGGCCATCCGACAATGGCTTTCGATCCAGACCGTCT 1814 ||||| || |||||||| ||||| ||||| || ||||| ||| |||| ||| | Sbjct 1314 TTGTCGTCTCATTTATCATCCTGACATGCATCCAACGATGGCGTTCAATCCCGACAGAAA 1255 Query 1815 ACAGAAGATATACGGTGCAACCTACCTCCCG 1845 | ||||| | ||| || || || |||||| Sbjct 1254 CCGCAAGATCTTCGGAGCGACATATCTCCCG 1224 >seq11939 Length=3504 Score = 77.0 bits (84), Expect = 5e-11 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1127 TCACTCCTTTCACTAAGCTTGAGAAAATGGGATCAAATAAGTACAAAGCTCCAAGACTTA 1186 ||| | ||||||||||||| ||||||| ||| | |||||||| || || |||| | Sbjct 2632 TCATTGCTTTCACTAAGCTGGAGAAAACTGGAAGCAGCAAGTACAAGGCGCCTCGACTCA 2691 Query 1187 TCCAAGCACGCCATCCAACATTCAATATCGCTTATGG 1223 | |||||| | ||| | ||||||||||||| ||||| Sbjct 2692 TTCAAGCAAGGCATGCCACATTCAATATCGAATATGG 2728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8090429807952