Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_033486.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value seq69909 224 1e-55 >seq69909 Length=1495 Score = 224 bits (248), Expect = 1e-55 Identities = 444/657 (68%), Gaps = 0/657 (0%) Strand=Plus/Minus Query 465 TATGCCAACTGGCCAACATTTGTCAAAAACAAATTCTGAGTTTAAAAATGATCCTTTATA 524 |||||| ||||| || || ||||| || |||||||| || || || || || | || || Sbjct 1132 TATGCCCACTGGGCAGCACTTGTCGAAGACAAATTCCGACTTGAAGAACGACGCCTTGTA 1073 Query 525 TTTAGAAGCATTCATGCCTTCTCCTTCCGAGGAGTTGGTTCCAATAGCCGAAGAGTTAAA 584 | ||||| || | || | || || || | | ||| | | |||||| | || Sbjct 1072 CATGGAAGCTTTTTTTCCAAGCTCATCTGAAGAACTAGCTCCTGTGCCAGAAGAGCTGAA 1013 Query 585 TCATTTTCCGGGTTTTGATGGTTTAACCACATTAATTGAAGAAACATATGAAAATTTTTC 644 ||||| ||| |||||||| || ||||| |||| ||| | || | ||||||||| | || Sbjct 1012 TCATTATCCCGGTTTTGAGGGATTAACATCATTGATTAATGAGAGTTATGAAAATATGTC 953 Query 645 TGCACATAATTTAAACTTTAAACGTTCTGTATCTTTATCTGCTTATTCTTATTATATTAC 704 || | | |||| ||||| | ||||| || ||||| ||||| | ||||| | | Sbjct 952 AGCTAAGAGCCTAAATTTTAAGAGATCTGTGTCCTTATCATCTTATGCATATTACGTCGC 893 Query 705 TGTTTTGTCTTGGGCCCGTGTTTTATATTTGAAGAAAATGAATAAATATAAATTAACTAC 764 ||||| | |||||| ||| ||| | || || | |||||||||||| | || Sbjct 892 CGTTTTTGCATGGGCCACAGTTCTATGGCTAAAAAATAAAAATAAATATAAACTCGAGAC 833 Query 765 TAACGAATTGGAGTTTATTGAAATGGTTTATGAACAAGGCAATTTCTTATTACCTAAGAG 824 || | |||||| | | ||| |||| ||||| || ||| | |||||||||| || Sbjct 832 GCTAGAGTCAGAGTTTTTAAACATGATTTACGAACAGGGTGATTACGTATTACCTAAAAG 773 Query 825 TGTAATAATTTATCTTTCTGGTTTTGGTAATTTTAACATCCCTTCAGGCGTTGAATCAAA 884 ||| | || ||| | || || |||| || ||| || ||||| ||| |||||| || Sbjct 772 TGTCACCATATATTTGTCAGGACTTGGCAACTTTTCAATACCTTCGGGCCCTGAATCGAA 713 Query 885 ATTTAATTTAAAACCATATACTTATGACGAATTAGGATATTTTGTAGACTTTGACACGAA 944 |||| | || | |||| ||||||||| || | |||| |||||||| | | | Sbjct 712 ATTTGACACGAAGTCTTATAAGTATGACGAAGATGGTTTCTTTGAGGACTTTGAGAAGGA 653 Query 945 ATTTTATTTATGCACAAGTTATCCTAATATTTCTATTGCTGCTGAACGTGTAATGCGCGA 1004 |||||| || | || || | ||||| ||| ||| ||| | || ||||| || Sbjct 652 CCATTATTTGTGTGCGTCATACCCGATAATTTCGATTTTTGCAGAAAGGGTTATGCGAGA 593 Query 1005 TTTAGCATACACTGACAATCCTGAAATTGGTGAAGCTTGGTCACCAGCCGAAATTGAACA 1064 | | || || || || | | | || ||| ||| ||||||||| | | || ||| Sbjct 592 TATCGCGTATACAGAAGACGATAACATAGGTAAAGATTGGTCACCTGATGGAAGGGAAGC 533 Query 1065 AGAGTGGAATACTCGCTGTATTGGTTACGCACCTTCCGTTATAATTCATGATATGCA 1121 ||| |||||| ||||||||||||||| || || ||||| | ||| ||| ||||| Sbjct 532 AGATTGGAATCGTCGCTGTATTGGTTATGCTCCATCCGTAAAGATTTCTGAAATGCA 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5233856250168