Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5780 280 5e-73 seq22166 230 8e-58 seq9953 87.8 6e-15 >seq5780 Length=8782 Score = 280 bits (310), Expect = 5e-73 Identities = 167/175 (95%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 3 AGTAGATAGGGACAGAGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 62 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || Sbjct 63 GAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTGCTT 122 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 123 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 177 >seq22166 Length=2410 Score = 230 bits (254), Expect = 8e-58 Identities = 159/179 (89%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCT-CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 |||||||||||||| ||||||| | || ||| |||| | | |||| ||||||||| Sbjct 179 CGGCTCCCACTTATGCTACACCCCGGCATGTCTCCGAACAATGCCAGACTGGAGTCAAGC 120 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 119 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 60 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 59 CTAGAAAGTAGATAGGGACAGAGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 1 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| |||||||||||||||||||| Sbjct 646 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 587 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| ||||||||||||||| | |||| || Sbjct 586 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCGGTGTCCTC 537 >seq9953 Length=2542 Score = 87.8 bits (96), Expect = 6e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 2490 AGTAGATAGGGACAGAGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 2542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634664913504