Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5780 284 4e-74 seq20507 149 2e-33 >seq5780 Length=8782 Score = 284 bits (314), Expect = 4e-74 Identities = 235/283 (83%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | || ||| || ||||| ||||| | ||||||||| Sbjct 6699 GTACTCATTCCGATTACGGGGCCTCGAATGAGTCCCGTATCGTTATTTTTCGTCACTACC 6758 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | |||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6759 TCCCCGAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 6818 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 6819 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACCACCACGGT 6878 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | |||||| |||| |||||||| |||||| ||||||| || | ||||||| Sbjct 6879 AGGCGTCGAACCTACCGTCGACAGTTGATAAGGCAGACATTTGAAAGATACGTCGCCGGT 6938 Query 240 TC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA 279 | ||| || |||||| | | |||||||| || ||||||| Sbjct 6939 ACGAAGACCGTGCGATCAGCTCGAAGTTATTCAGAGTCACCAA 6981 Score = 196 bits (216), Expect = 1e-47 Identities = 144/164 (88%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAA 401 |||||||||||||||||||||||||| |||||||| ||| || ||||| ||| || | Sbjct 7135 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGTG-GGTACGATCTAAGGA 7193 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGA 460 || ||||||||||||||||||| ||||| ||||||| ||| |||| |||| ||| ||| Sbjct 7194 ACCATAACTGATTTAATGAGCCTTTCGCGGTTTCACCGTACTAGACGGCTTGCACTGAGA 7253 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 7254 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 7297 >seq20507 Length=42668 Score = 149 bits (164), Expect = 2e-33 Identities = 116/137 (85%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| | || | || ||| |||||||| ||||| | |||||||| Sbjct 25433 GTACTCATTCGGATTACAGGGCCTCGAATGAGTCCTGTATCGTTATTTTTCATCACTACC 25492 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||| | Sbjct 25493 TCCCCGAGCTGGGAGTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATGTGATAGCCTT 25552 Query 120 TTCTCAGGCTCCCTCTC 136 |||||| |||||||||| Sbjct 25553 TTCTCAAGCTCCCTCTC 25569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509905751808