Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq122 185 2e-44 >seq122 Length=4874392 Score = 185 bits (204), Expect = 2e-44 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | Sbjct 4452918 AGGGGAGTGAAACAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACCTTCGTGGT 4452977 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 4452978 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAACC 4453036 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 4453037 GTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGTA 4453091 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||| Sbjct 4453092 TAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGG 4453151 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| || |||||||| || ||||||||| | || | |||||||||||| Sbjct 4453152 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGC 4453211 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| |||| |||||| || Sbjct 4453212 CAATCAAACCGGGAGATAGCTGGT 4453235 Score = 185 bits (204), Expect = 2e-44 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | Sbjct 4584531 AGGGGAGTGAAACAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACCTTCGTGGT 4584590 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 4584591 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAACC 4584649 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 4584650 GTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGTA 4584704 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||| Sbjct 4584705 TAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGG 4584764 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| || |||||||| || ||||||||| | || | |||||||||||| Sbjct 4584765 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGC 4584824 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| |||| |||||| || Sbjct 4584825 CAATCAAACCGGGAGATAGCTGGT 4584848 Score = 185 bits (204), Expect = 2e-44 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | Sbjct 4740036 AGGGGAGTGAAACAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACCTTCGTGGT 4740095 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 4740096 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAACC 4740154 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| |||||| ||||| ||||| || Sbjct 4740155 GTATAGGGG-----AGCCGCAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGTA 4740209 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||| Sbjct 4740210 TAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTGG 4740269 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| || |||||||| || ||||||||| | || | |||||||||||| Sbjct 4740270 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGC 4740329 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| |||| |||||| || Sbjct 4740330 CAATCAAACCGGGAGATAGCTGGT 4740353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972739073536