Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq385 266 5e-69 seq871 235 8e-60 seq228 174 2e-41 seq183 82.4 1e-13 >seq385 Length=166179 Score = 266 bits (294), Expect = 5e-69 Identities = 198/228 (87%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| || Sbjct 162158 TACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTACGCTTACTAGGAATT-CC 162101 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 |||||||||| ||| |||||||||| |||||||||| ||||| | ||| | ||||||| Sbjct 162100 TCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATTA 162041 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | ||| ||| ||||| | | |||||||| | |||||||||||||||||||| Sbjct 162040 CCCAGTCCTTCCGGACAAGGAAAAAAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGG 161981 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161980 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 161933 >seq871 Length=10861 Score = 235 bits (260), Expect = 8e-60 Identities = 192/229 (84%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || | |||||| ||||||||| || ||||||| ||| | Sbjct 2325 GTACAAAGGGCAGGGACGTAATCGGCACGAGCT-GATGACTCGTGCCTACTAGGCATT-C 2268 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| ||| | |||||| Sbjct 2267 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGGGTTTAACAAGATT 2208 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| |||| |||||||| ||||| || ||||||||||||||||||| Sbjct 2207 ACCCAGGCCTCTCGGTTAAGGTGATGTACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCG 2148 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 2147 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGCGCACTTCC 2099 >seq228 Length=334299 Score = 174 bits (192), Expect = 2e-41 Identities = 200/258 (78%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| | Sbjct 80131 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 80074 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||| | | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 80073 CTCGGTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 80014 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||| || || ||| || ||| | ||| ||||||| ||||||| Sbjct 80013 ACCCGGACCTTTCGGCC--GGAGAG-GACACGCTGATACCTTCATTGTAGCGTGCGTGCG 79957 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 79956 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 79900 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 79899 AGCCGCCTGTCCCTCTAA 79882 >seq183 Length=415644 Score = 82.4 bits (90), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| ||| |||| ||| || | ||||| ||| ||||| |||| ||| Sbjct 263952 GTACAAAGGGCAGGGTTGTAATCAAGGCGTGC-TAATGACACGCCTTTACTGGGAA-TTC 264009 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||| | | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 264010 CTCGGTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 264069 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||||||| ||||||| || Sbjct 264070 ACCCGGACCTTTCGGCCAGGG 264090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751954374045