Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq385 266 5e-69
seq871 235 8e-60
seq228 174 2e-41
seq183 82.4 1e-13
>seq385
Length=166179
Score = 266 bits (294), Expect = 5e-69
Identities = 198/228 (87%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||
Sbjct 162158 TACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTACGCTTACTAGGAATT-CC 162101
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120
|||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||||
Sbjct 162100 TCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATTA 162041
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| | ||| ||| ||||| | | |||||||| | ||||||||||||||||||||
Sbjct 162040 CCCAGTCCTTCCGGACAAGGAAAAAAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGG 161981
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161980 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 161933
>seq871
Length=10861
Score = 235 bits (260), Expect = 8e-60
Identities = 192/229 (84%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| || | |||||| ||||||||| || ||||||| ||| |
Sbjct 2325 GTACAAAGGGCAGGGACGTAATCGGCACGAGCT-GATGACTCGTGCCTACTAGGCATT-C 2268
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||||||||| |||||||||| ||||| ||| | ||||||
Sbjct 2267 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGGGTTTAACAAGATT 2208
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| | ||| |||| |||||||| ||||| || |||||||||||||||||||
Sbjct 2207 ACCCAGGCCTCTCGGTTAAGGTGATGTACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCG 2148
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228
||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2147 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCGCGCACTTCC 2099
>seq228
Length=334299
Score = 174 bits (192), Expect = 2e-41
Identities = 200/258 (78%), Gaps = 11/258 (4%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| |
Sbjct 80131 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 80074
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||| | | | ||||||| ||| | ||||| | ||||| | ||||| | ||
Sbjct 80073 CTCGGTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 80014
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| |||||| || || ||| || ||| | ||| ||||||| |||||||
Sbjct 80013 ACCCGGACCTTTCGGCC--GGAGAG-GACACGCTGATACCTTCATTGTAGCGTGCGTGCG 79957
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238
||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| |
Sbjct 79956 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 79900
Query 239 AGGC-CATCTCCCTCGAA 255
|| | | | |||||| ||
Sbjct 79899 AGCCGCCTGTCCCTCTAA 79882
>seq183
Length=415644
Score = 82.4 bits (90), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||| ||| |||| ||| || | ||||| ||| ||||| |||| |||
Sbjct 263952 GTACAAAGGGCAGGGTTGTAATCAAGGCGTGC-TAATGACACGCCTTTACTGGGAA-TTC 264009
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||| | | | ||||||| ||| | ||||| | ||||| | ||||| | ||
Sbjct 264010 CTCGGTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 264069
Query 120 ACCCGGACCTGTCGGCCAAGG 140
|||||||||| ||||||| ||
Sbjct 264070 ACCCGGACCTTTCGGCCAGGG 264090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751954374045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |