Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq871 834 0.0 seq385 500 4e-139 seq898 131 7e-28 >seq871 Length=10861 Score = 834 bits (924), Expect = 0.0 Identities = 584/664 (88%), Gaps = 1/664 (0%) Strand=Plus/Plus Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 3236 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTA 3295 Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3296 AATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAA 3355 Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3356 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 3415 Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259 ||||| | |||||| ||| || | | ||| |||||| |||||||| ||| | || Sbjct 3416 CTTGCGATCAGACTCGCCTGCGGG-GTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGC 3474 Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 || | ||||||| || | | |||||| ||| ||||||||| ||||||| | || ||| Sbjct 3475 GGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCG 3534 Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379 ||| || |||||||| |||||| |||||||| ||| |||| |||| |||||| ||||| Sbjct 3535 GGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCT 3594 Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439 ||| |||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||| Sbjct 3595 CGGACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 3654 Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499 ||||| ||||||||| ||||||||||||||| |||| | |||||| |||||||||||||| Sbjct 3655 ATCTACGCGAGTGTTCGGGTGTCAAACCCGTACGCGCAGTGAAAGCGAACGGAGGTGGGA 3714 Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3715 ACCCTCACGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCG 3774 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||| Sbjct 3775 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGGGGAAAC 3834 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||| |||||| || |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 3835 CCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGG 3894 Query 680 GCGA 683 |||| Sbjct 3895 GCGA 3898 >seq385 Length=166179 Score = 500 bits (554), Expect = 4e-139 Identities = 528/693 (76%), Gaps = 43/693 (6%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 164051 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 164110 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | |||||||||||||||||| ||||||||||||| ||||||| |||| |||||| Sbjct 164111 TCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGA 164170 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||| Sbjct 164171 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCACTT 164230 Query 203 GCAACCAGACTTGCCC-GCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 | | |||| ||| | ||| |||| ||| || | ||| || ||| Sbjct 164231 GAAGTCAGATATGCATAGTAGTA-CTCA----GCCTTATGGTGTATTTACTATTGTGC-- 164283 Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321 |||||| |||| | | | ||||||| || | ||||||||||| | || || Sbjct 164284 --AGGCCAACATCGATTTTTGGTGACGGATAAGGGTACAAGGAATGTGGCCTC--TCCGG 164339 Query 322 GGGTGTTATAGCCC-------------------GGGGTGGA--AT----GCGGCCCGCCT 356 |||||||||||| ||| | || || ||| ||| | Sbjct 164340 AGGTGTTATAGCCTTGTACTGGATACGTGACTAGGGATCGAGGATCGCAGCGTCCCCATT 164399 Query 357 -GGACTGAGGTCCGCGCTC-----CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCC 410 || | | | || || | || ||||||| ||||||||||| | |||| | ||| Sbjct 164400 AGGGCAGGCCTTCGGGCACTTTGACGCTTAGGATGTTGGCGTAATGGCTTTAAGTGACCC 164459 Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGT 470 |||||| |||||||||||||||||||||||| | ||||||| |||||||| ||||||| | Sbjct 164460 GTCTTGAAACACGGACCAAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGGCAAACCCAT 164519 Query 471 GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTG 530 ||| |||||||||||| | |||||||| ||| | ||||||||||||||||||||| | Sbjct 164520 CGGCGCAATGAAAGTGAATGTAGGTGGGATCCCTCGCGGGTGCACCATCGACCGATCCAG 164579 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 || | | || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 164580 ATCTTCTGTGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTA 164639 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 |||||| ||| |||| ||| |||||| ||| |||||| || |||| ||||| |||| Sbjct 164640 TGCCTGGCCAGGACGAAGTCAGGGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTG 164699 Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||||||||||||||| Sbjct 164700 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 164732 >seq898 Length=41579 Score = 131 bits (144), Expect = 7e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 31742 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 31801 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||| ||||||||||||| | ||||| Sbjct 31802 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTACAAATCGATCGTCGGAGCTGGGT 31861 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 31862 ATAGGGGCGA 31871 Score = 118 bits (130), Expect = 4e-24 Identities = 116/147 (79%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 30392 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 30451 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 30452 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 30510 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 | |||||| || || |||||||| || Sbjct 30511 GACAGAGTTCAAGAGTACGTGAAACTG 30537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079865658650