Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq871 834 0.0
seq385 500 4e-139
seq898 131 7e-28
>seq871
Length=10861
Score = 834 bits (924), Expect = 0.0
Identities = 584/664 (88%), Gaps = 1/664 (0%)
Strand=Plus/Plus
Query 20 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTA 79
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 3236 CCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTA 3295
Query 80 AATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAA 139
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3296 AATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAA 3355
Query 140 AGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3356 AGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 3415
Query 200 CTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGC 259
||||| | |||||| ||| || | | ||| |||||| |||||||| ||| | ||
Sbjct 3416 CTTGCGATCAGACTCGCCTGCGGG-GTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGC 3474
Query 260 GGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319
|| | ||||||| || | | |||||| ||| ||||||||| ||||||| | || |||
Sbjct 3475 GGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCG 3534
Query 320 GGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCT 379
||| || |||||||| |||||| |||||||| ||| |||| |||| |||||| |||||
Sbjct 3535 GGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCT 3594
Query 380 AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAAC 439
||| |||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 3595 CGGACGCTGGCATAATGGTCGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAAC 3654
Query 440 ATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGA 499
||||| ||||||||| ||||||||||||||| |||| | |||||| ||||||||||||||
Sbjct 3655 ATCTACGCGAGTGTTCGGGTGTCAAACCCGTACGCGCAGTGAAAGCGAACGGAGGTGGGA 3714
Query 500 ACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3715 ACCCTCACGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCG 3774
Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619
||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||
Sbjct 3775 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGGGGAAAC 3834
Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
||| |||||| || |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 3835 CCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGG 3894
Query 680 GCGA 683
||||
Sbjct 3895 GCGA 3898
>seq385
Length=166179
Score = 500 bits (554), Expect = 4e-139
Identities = 528/693 (76%), Gaps = 43/693 (6%)
Strand=Plus/Plus
Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82
||||| | | ||| | ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 164051 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 164110
Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142
| | |||||||||||||||||| ||||||||||||| ||||||| |||| ||||||
Sbjct 164111 TCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGA 164170
Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202
|||||||||||||||||||||||||||| || |||||||||||| |||||||||| |||
Sbjct 164171 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCACTT 164230
Query 203 GCAACCAGACTTGCCC-GCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGG 261
| | |||| ||| | ||| |||| ||| || | ||| || |||
Sbjct 164231 GAAGTCAGATATGCATAGTAGTA-CTCA----GCCTTATGGTGTATTTACTATTGTGC-- 164283
Query 262 TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGG 321
|||||| |||| | | | ||||||| || | ||||||||||| | || ||
Sbjct 164284 --AGGCCAACATCGATTTTTGGTGACGGATAAGGGTACAAGGAATGTGGCCTC--TCCGG 164339
Query 322 GGGTGTTATAGCCC-------------------GGGGTGGA--AT----GCGGCCCGCCT 356
|||||||||||| ||| | || || ||| ||| |
Sbjct 164340 AGGTGTTATAGCCTTGTACTGGATACGTGACTAGGGATCGAGGATCGCAGCGTCCCCATT 164399
Query 357 -GGACTGAGGTCCGCGCTC-----CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCC 410
|| | | | || || | || ||||||| ||||||||||| | |||| | |||
Sbjct 164400 AGGGCAGGCCTTCGGGCACTTTGACGCTTAGGATGTTGGCGTAATGGCTTTAAGTGACCC 164459
Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGT 470
|||||| |||||||||||||||||||||||| | ||||||| |||||||| ||||||| |
Sbjct 164460 GTCTTGAAACACGGACCAAGGAGTCTAACATGTCTGCGAGTCTTTGGGTGGCAAACCCAT 164519
Query 471 GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTG 530
||| |||||||||||| | |||||||| ||| | ||||||||||||||||||||| |
Sbjct 164520 CGGCGCAATGAAAGTGAATGTAGGTGGGATCCCTCGCGGGTGCACCATCGACCGATCCAG 164579
Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590
|| | | || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 164580 ATCTTCTGTGACGGATTTGAGTAAGAGCATATATGTTGGGACCCGAAAGATGGTGAACTA 164639
Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650
|||||| ||| |||| ||| |||||| ||| |||||| || |||| ||||| ||||
Sbjct 164640 TGCCTGGCCAGGACGAAGTCAGGGGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTG 164699
Query 651 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||||||||||||||||||||||||||||||
Sbjct 164700 CAAATCGATCGTCAAATTTGGGTATAGGGGCGA 164732
>seq898
Length=41579
Score = 131 bits (144), Expect = 7e-28
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 31742 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 31801
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||| |||||| || |||| ||||| ||| ||||||||||||| | |||||
Sbjct 31802 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTACAAATCGATCGTCGGAGCTGGGT 31861
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 31862 ATAGGGGCGA 31871
Score = 118 bits (130), Expect = 4e-24
Identities = 116/147 (79%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| |||||||
Sbjct 30392 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 30451
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| |
Sbjct 30452 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 30510
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185
| |||||| || || |||||||| ||
Sbjct 30511 GACAGAGTTCAAGAGTACGTGAAACTG 30537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079865658650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |