Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq122 430 3e-118 >seq122 Length=4874392 Score = 430 bits (476), Expect = 3e-118 Identities = 343/409 (84%), Gaps = 3/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 4451003 TACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 4451062 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTG 121 |||||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || Sbjct 4451063 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGT-CAAGTCGGATG 4451121 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||||||||||||| |||||||||| |||||| | |||| | ||||||| | || Sbjct 4451122 TGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAG 4451181 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 |||||||| |||||||| ||||||| |||||||||||||| || |||||||| ||| || Sbjct 4451182 AGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTG 4451241 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| ||||||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 4451242 GCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACA 4451301 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAAC-TAGTTGTTGGGGATTTA 360 ||||||||||||||||||||||||||| |||||||| || || | | |||| | || Sbjct 4451302 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTG 4451361 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | | | || ||||||||||| |||| ||||||||||||| ||| Sbjct 4451362 AGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTAC 4451410 Score = 430 bits (476), Expect = 3e-118 Identities = 343/409 (84%), Gaps = 3/409 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 4582617 TACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 4582676 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTG 121 |||||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || Sbjct 4582677 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGT-CAAGTCGGATG 4582735 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||||||||||||| |||||||||| |||||| | |||| | ||||||| | || Sbjct 4582736 TGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAG 4582795 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 |||||||| |||||||| ||||||| |||||||||||||| || |||||||| ||| || Sbjct 4582796 AGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTG 4582855 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| ||||||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 4582856 GCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACA 4582915 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAAC-TAGTTGTTGGGGATTTA 360 ||||||||||||||||||||||||||| |||||||| || || | | |||| | || Sbjct 4582916 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTG 4582975 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | | | || ||||||||||| |||| ||||||||||||| ||| Sbjct 4582976 AGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTAC 4583024 Score = 426 bits (472), Expect = 4e-117 Identities = 346/417 (83%), Gaps = 19/417 (5%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 4738121 TACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 4738180 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT-TGTGTAAGACAGGTG 121 |||||||||||||||||||||||||||||||| |||||||||| ||| ||| | | || Sbjct 4738181 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGT-CAAGTCGGATG 4738239 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 ||||||||||||||| |||||||||| |||||| | |||| | ||||||| | || Sbjct 4738240 TGAAATCCCCGGGCTCAACCTGGGAACTGCATTCGAAACTGGCAGGCTAGAGTCTTGTAG 4738299 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 |||||||| |||||||| ||||||| |||||||||||||| || |||||||| ||| || Sbjct 4738300 AGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTG 4738359 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| ||||||||| || ||||||||||| | ||||||||||||||||||||| Sbjct 4738360 GCGAAGGCGGCCCCCTGGACAAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACA 4738419 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACT----AGTTG-----TTG 352 ||||||||||||||||||||||||||| |||||||| || ||| |||| ||| Sbjct 4738420 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTG 4738479 Query 353 GGGATTTACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| | |||| || ||||||||||| |||| ||||||||||||| ||| Sbjct 4738480 AGGAGTGGCTTC--------CGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTAC 4738528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289519232352