Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq122 174 2e-41 >seq122 Length=4874392 Score = 174 bits (192), Expect = 2e-41 Identities = 193/253 (76%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 4454280 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 4454222 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC-- 119 | ||||||||||| |||||||| || || || | ||| |||| || |||||| Sbjct 4454221 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGCCTTCAGCTCCG 4454162 Query 120 --AACACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | || || |||||| | | || ||||||||||||||||||| |||||||| Sbjct 4454161 TCAGCAAGTGACTTCACCTAACGACAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTG 4454102 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||||| Sbjct 4454101 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG 4454042 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 4454041 TCGGTTTGGGGTA 4454029 Score = 174 bits (192), Expect = 2e-41 Identities = 193/253 (76%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 4585893 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 4585835 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC-- 119 | ||||||||||| |||||||| || || || | ||| |||| || |||||| Sbjct 4585834 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGCCTTCAGCTCCG 4585775 Query 120 --AACACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | || || |||||| | | || ||||||||||||||||||| |||||||| Sbjct 4585774 TCAGCAAGTGACTTCACCTAACGACAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTG 4585715 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||||| Sbjct 4585714 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG 4585655 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 4585654 TCGGTTTGGGGTA 4585642 Score = 174 bits (192), Expect = 2e-41 Identities = 193/253 (76%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 4741398 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 4741340 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTC-- 119 | ||||||||||| |||||||| || || || | ||| |||| || |||||| Sbjct 4741339 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGCCTTCAGCTCCG 4741280 Query 120 --AACACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | || || |||||| | | || ||||||||||||||||||| |||||||| Sbjct 4741279 TCAGCAAGTGACTTCACCTAACGACAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTG 4741220 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 || | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||||| Sbjct 4741219 CCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTG 4741160 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 4741159 TCGGTTTGGGGTA 4741147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694357868799