Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq122 571 1e-160 seq705 145 2e-32 >seq122 Length=4874392 Score = 571 bits (632), Expect = 1e-160 Identities = 388/431 (90%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4454476 CGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 4454417 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4454416 CTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4454357 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 4454356 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTG 4454297 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4454296 CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCAC 4454237 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 4454236 TTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGA 4454177 Query 299 CCGGCATGAGCTTACGGAGCAAGT-CCTTCACCCTCAC--CGGCGCACCTTCTCCCGAAG 355 | | | | |||| ||||||| ||||| ||| || | ||| ||||||||||||| Sbjct 4454176 CTGCCTTCAGCTCCGTCAGCAAGTGACTTCA-CCTAACGACAGCGTGCCTTCTCCCGAAG 4454118 Query 356 TTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4454117 TTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 4454058 Query 416 TACCCAACCAC 426 |||| ||||| Sbjct 4454057 TACCTGACCAC 4454047 Score = 571 bits (632), Expect = 1e-160 Identities = 388/431 (90%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4586089 CGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 4586030 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4586029 CTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4585970 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 4585969 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTG 4585910 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4585909 CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCAC 4585850 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 4585849 TTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGA 4585790 Query 299 CCGGCATGAGCTTACGGAGCAAGT-CCTTCACCCTCAC--CGGCGCACCTTCTCCCGAAG 355 | | | | |||| ||||||| ||||| ||| || | ||| ||||||||||||| Sbjct 4585789 CTGCCTTCAGCTCCGTCAGCAAGTGACTTCA-CCTAACGACAGCGTGCCTTCTCCCGAAG 4585731 Query 356 TTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4585730 TTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 4585671 Query 416 TACCCAACCAC 426 |||| ||||| Sbjct 4585670 TACCTGACCAC 4585660 Score = 571 bits (632), Expect = 1e-160 Identities = 388/431 (90%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4741594 CGCGGGTACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 4741535 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4741534 CTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4741475 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 4741474 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTG 4741415 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4741414 CGGATAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCAC 4741355 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 4741354 TTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGA 4741295 Query 299 CCGGCATGAGCTTACGGAGCAAGT-CCTTCACCCTCAC--CGGCGCACCTTCTCCCGAAG 355 | | | | |||| ||||||| ||||| ||| || | ||| ||||||||||||| Sbjct 4741294 CTGCCTTCAGCTCCGTCAGCAAGTGACTTCA-CCTAACGACAGCGTGCCTTCTCCCGAAG 4741236 Query 356 TTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 4741235 TTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 4741176 Query 416 TACCCAACCAC 426 |||| ||||| Sbjct 4741175 TACCTGACCAC 4741165 >seq705 Length=31904 Score = 145 bits (160), Expect = 2e-32 Identities = 201/278 (72%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| | Sbjct 10842 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC 10901 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| | ||||| |||||| | | | ||| | | ||||| ||||||||||||||||| Sbjct 10902 ATCGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 10961 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || ||||||| || | ||||| || |||| | || |||| |||| Sbjct 10962 CCCTCATAGGTAAGGCCGCCATTAATCGGGGTGTCCTTCAAAACCT--CAGTTA-ATAAC 11018 Query 187 C-----CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTT 240 | ||| ||| || ||| || ||||||| | |||||| | |||| | | || Sbjct 11019 CAAGGAAAATCCGTTACCCAGCCGACATCGGGCAGACATCACACTCAATACTTTGATTTT 11078 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | |||||||||||||||||||||| |||||||||| Sbjct 11079 TTATCTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCG 11116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260721036096