Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq122 221 3e-55 seq705 84.2 5e-14 >seq122 Length=4874392 Score = 221 bits (244), Expect = 3e-55 Identities = 218/277 (79%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 4454470 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 4454411 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4454410 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 4454353 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGC-TC 176 |||||||||||||||||||||||||||| ||||||| | | ||||| |||| Sbjct 4454352 GACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTGCGGA 4454293 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 |||| | |||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 4454292 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC 4454233 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 | || ||| | |||||||||| |||||||| || Sbjct 4454232 GTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 4454196 Score = 221 bits (244), Expect = 3e-55 Identities = 218/277 (79%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 4586083 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 4586024 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4586023 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 4585966 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGC-TC 176 |||||||||||||||||||||||||||| ||||||| | | ||||| |||| Sbjct 4585965 GACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTGCGGA 4585906 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 |||| | |||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 4585905 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC 4585846 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 | || ||| | |||||||||| |||||||| || Sbjct 4585845 GTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 4585809 Score = 221 bits (244), Expect = 3e-55 Identities = 218/277 (79%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG--TGCCC 58 ||| | |||||||||| | || | ||||||||| |||||| || ||||||| || || Sbjct 4741588 TACACTGCATCTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCC 4741529 Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 | || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4741528 A--TCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 4741471 Query 119 GACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGC-TC 176 |||||||||||||||||||||||||||| ||||||| | | ||||| |||| Sbjct 4741470 GACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCTCCTTGCGGA 4741411 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 |||| | |||||||||| ||||||||||||||||| | ||||| || ||| | Sbjct 4741410 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC 4741351 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 | || ||| | |||||||||| |||||||| || Sbjct 4741350 GTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGC 4741314 >seq705 Length=31904 Score = 84.2 bits (92), Expect = 5e-14 Identities = 107/147 (73%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAATCG 64 |||| ||| | ||| ||||||||| ||| | || | ||||||| ||| |||| Sbjct 10850 ATCTGCACTGCTATTCCAATTTCACTGAGACAATCATCGAGACAGCTGTTGC----ATCG 10905 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||| | | ||| ||| || | | | ||| | | ||||| ||||||||||||||||||| | Sbjct 10906 TTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGACCCT 10965 Query 125 TATAGTTACGGCCGCCGTTTACTGGGG 151 |||| || ||||||| || | |||| Sbjct 10966 CATAGGTAAGGCCGCCATTAATCGGGG 10992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062333461888