Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq122 506 6e-141 >seq122 Length=4874392 Score = 506 bits (560), Expect = 6e-141 Identities = 414/498 (83%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 4451408 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4451467 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||||| | || Sbjct 4451468 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATCCACGGAATTTGG 4451527 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | | |||||||| || | | |||||||| ||||||| ||||||||| Sbjct 4451528 CAGAGAT-GCCTTAGTGCCTTCGGGA-ACCGTGAGACAGGTGCTGCATGGCTGTCGTCAG 4451585 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 4451586 CTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGC 4451645 Query 241 CATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || || ||| | |||| |||| ||| |||||||||||| ||||||||||||||||||| Sbjct 4451646 CAGCACGTAATGGTGGGAACTCAAAGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGG 4451705 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| |||||||| |||||| | ||||||||||||||||||||||| || Sbjct 4451706 ATGACGTCAAGTCATCATGGCCCTTACGGCCAGGGCTACACACGTGCTACAATGGCGCAT 4451765 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||| | ||||| |||||| ||||| | | |||||||| || ||| ||||| Sbjct 4451766 ACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGAT 4451825 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 | |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct 4451826 CGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCT 4451885 Query 479 ACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 4451886 ACGGTGAATACGTTCCCG 4451903 Score = 506 bits (560), Expect = 6e-141 Identities = 414/498 (83%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 4583022 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4583081 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||||| | || Sbjct 4583082 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATCCACGGAATTTGG 4583141 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | | |||||||| || | | |||||||| ||||||| ||||||||| Sbjct 4583142 CAGAGAT-GCCTTAGTGCCTTCGGGA-ACCGTGAGACAGGTGCTGCATGGCTGTCGTCAG 4583199 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 4583200 CTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGC 4583259 Query 241 CATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || || ||| | |||| |||| ||| |||||||||||| ||||||||||||||||||| Sbjct 4583260 CAGCACGTAATGGTGGGAACTCAAAGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGG 4583319 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| |||||||| |||||| | ||||||||||||||||||||||| || Sbjct 4583320 ATGACGTCAAGTCATCATGGCCCTTACGGCCAGGGCTACACACGTGCTACAATGGCGCAT 4583379 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||| | ||||| |||||| ||||| | | |||||||| || ||| ||||| Sbjct 4583380 ACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGAT 4583439 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 | |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct 4583440 CGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCT 4583499 Query 479 ACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 4583500 ACGGTGAATACGTTCCCG 4583517 Score = 497 bits (550), Expect = 3e-138 Identities = 412/498 (83%), Gaps = 4/498 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 4738526 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4738585 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||||| | || Sbjct 4738586 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATCCACGGAATTTGG 4738645 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | | |||||||| || | | |||||||| ||||||| ||||||||| Sbjct 4738646 CAGAGAT-GCCTTAGTGCCTTCGGGA-ACCGTGAGACAGGTGCTGCATGGCTGTCGTCAG 4738703 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 4738704 CTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGC 4738763 Query 241 CATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || || ||| | ||| |||| ||| |||||||||||| ||||||||||||||||||| Sbjct 4738764 CAGCAAGTAATGGCGGGAACTCAAAGGAGACTGCCGGTGATAAACCGGAGGAAGGTGGGG 4738823 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| |||||||| |||||| | ||||||||||||||||||||||| || Sbjct 4738824 ATGACGTCAAGTCATCATGGCCCTTACGGCCAGGGCTACACACGTGCTACAATGGCGCAT 4738883 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||| | ||||| |||||| ||||| | | || ||||| || ||| ||||| Sbjct 4738884 ACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCACAAAGTGCGTCGTAGTCCGGAT 4738943 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 | |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct 4738944 CGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGTAGATCAGAATGCT 4739003 Query 479 ACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 4739004 ACGGTGAATACGTTCCCG 4739021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503905804480