Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq385 361 9e-98 seq871 309 5e-82 seq249 205 1e-50 seq228 199 6e-49 seq519 167 4e-39 seq128 149 1e-33 >seq385 Length=166179 Score = 361 bits (400), Expect = 9e-98 Identities = 236/259 (91%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162014 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 161955 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| || | | |||||||||||||||||||| Sbjct 161954 CCTGTTATTGCCTCAAACTTCCATCTACTAAACGTAGATAGTCCCTCTAAGAAGCCAAAG 161895 Query 122 A--CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 161894 AAGCCAACCAAAGTCGACTCGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 161835 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 161834 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAG 161775 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 161774 AAAGAGCTCTCAATCTGTC 161756 >seq871 Length=10861 Score = 309 bits (342), Expect = 5e-82 Identities = 225/258 (87%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2181 TACTCGCTGGCCCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 2122 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||| | |||||||| |||| || ||| |||||||| ||||||||||||| Sbjct 2121 ACCTGTTATTGCCGCGCACTTCCATCGGCTTGA-GCCGATAGTCCCCCTAAGAAGCCAGC 2063 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 || | | | || |||||||||| || |||||||||||||||||| ||||| Sbjct 2062 GGCCCGCAAATGCGGACCGGGCTATTTAAG-GGCCGAGGTCTCGTTCGTTATCGCAATTA 2004 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2003 AGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGA 1944 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 1943 AAGAGCTCTCAATCTGTC 1926 >seq249 Length=313394 Score = 205 bits (226), Expect = 1e-50 Identities = 188/235 (80%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 38 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCC 97 ||||||||||||||||||||||||||||||||||| |||| || | |||| |||||| Sbjct 129602 CAGAACATCTAAGGGCATCACAGACCTGTTATTGC-TCAATCT-CGTGCGGCTAGAAGCC 129545 Query 98 AATAGTCCCTCTAAGAAG-----------CCAGC--CACCAACCATAGTCG-ATGGGGCT 143 |||||||||||||| || || || ||| || || | | || Sbjct 129544 GCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCTGCAACAAAGGAAGCCGGAAACGACT 129485 Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 | |||||||| || |||||||||||||||| |||||| |||||||||| |||||||||| Sbjct 129484 AGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCGCTCCACCAAC 129425 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 129424 TAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 129370 >seq228 Length=334299 Score = 199 bits (220), Expect = 6e-49 Identities = 202/260 (78%), Gaps = 20/260 (8%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79978 CCTTCATTGTAGCGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 79919 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120 |||| || | |||| |||||| |||||||||||||| || || Sbjct 79918 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 79861 Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || ||| || || | | ||| |||||||| || ||| |||| |||| ||| Sbjct 79860 GCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCCCGTT----ATCGTAAT 79805 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| ||||||||| ||||||||||||||||| | |||||||||||||||| ||||||| Sbjct 79804 TAAGCAGACAAATTTCTCCACCAACTAAGAACAGGCATGCACCACCACCCACTGAATCAA 79745 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 79744 GAAAGAGCTCTCAATCTGTC 79725 >seq519 Length=91744 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| || |||||||||||||||| |||||| |||||||||| |||||||| Sbjct 55322 CTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCGCTCCACCA 55263 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 55262 ACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCAATCTGTC 55206 >seq128 Length=668674 Score = 149 bits (164), Expect = 1e-33 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||||||||| |||||| |||||||||| |||||||||||| Sbjct 439278 TTAGCAGGCTAGAGTCTCGTTCGTTATCGCAATTAAGCAGACAAATCGCTCCACCAACTA 439219 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||||||||||||||||| |||||||||||||||| Sbjct 439218 AGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCT 439177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796751655903