Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq871 497 2e-138
seq122 78.8 2e-12
>seq871
Length=10861
Score = 497 bits (550), Expect = 2e-138
Identities = 287/295 (97%), Gaps = 0/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
|||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 5988 TACTAAATTGAATTACCGTTGCGGCGACCTTCATCAGTAGGGTAAAACTAACCTGTCTCA 5929
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5928 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 5869
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5868 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 5809
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5808 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 5749
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5748 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 5694
Score = 89.7 bits (98), Expect = 9e-16
Identities = 53/54 (98%), Gaps = 1/54 (2%)
Strand=Plus/Minus
Query 203 AGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6989 AGTTAATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 6936
>seq122
Length=4874392
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 4455031 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACC 4454972
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 4454971 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 4454915
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 4454914 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 4454860
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 4586644 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACC 4586585
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 4586584 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 4586528
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 4586527 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 4586473
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| |||||||||||||| ||| || ||| || ||||| | ||
Sbjct 4742149 CTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAACGGCGAACAGCCGTACC 4742090
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | ||| || | | ||| || ||||||||||||| | |||| | |
Sbjct 4742089 CTTGGGACCTACTTCAGCCCCAGGATGT---GATGAGCCGACATCGAGGTGCCAAACACC 4742033
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||||| ||||| | | |||| |||||||| | ||| |||||
Sbjct 4742032 GCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTT 4741978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854346488928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |