Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq122 167 5e-39 >seq122 Length=4874392 Score = 167 bits (184), Expect = 5e-39 Identities = 226/311 (73%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||||||| | | |||||| ||| |||| |||| | | || ||| ||||||| Sbjct 4454570 ACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTT-TAACGTTTGATGTTCTAAC 4454628 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | || ||| | ||| | ||||||||||| | ||| |||||||||||||||||| Sbjct 4454629 CTGGCGCCGTG-ATCCGGCGTGGGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT 4454687 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 ||||| ||||||||||||||| || | ||| | || | | || ||| | | || | Sbjct 4454688 CCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTAGCTAATCACGGTCGGACATCGTGAGG 4454747 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 ||||||| |||| ||| | |||||||||| | | || |||||| |||||| Sbjct 4454748 TTAGTGCAATGGCATAAGCTAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAG 4454807 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 || | || |||||||| ||| |||||||||| |||| |||||| ||||||||||| || Sbjct 4454808 CAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTA 4454867 Query 329 CCCTGGGGATA 339 | | ||||||| Sbjct 4454868 CTCCGGGGATA 4454878 Score = 167 bits (184), Expect = 5e-39 Identities = 226/311 (73%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||||||| | | |||||| ||| |||| |||| | | || ||| ||||||| Sbjct 4586183 ACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTT-TAACGTTTGATGTTCTAAC 4586241 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | || ||| | ||| | ||||||||||| | ||| |||||||||||||||||| Sbjct 4586242 CTGGCGCCGTG-ATCCGGCGTGGGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT 4586300 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 ||||| ||||||||||||||| || | ||| | || | | || ||| | | || | Sbjct 4586301 CCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTAGCTAATCACGGTCGGACATCGTGAGG 4586360 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 ||||||| |||| ||| | |||||||||| | | || |||||| |||||| Sbjct 4586361 TTAGTGCAATGGCATAAGCTAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAG 4586420 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 || | || |||||||| ||| |||||||||| |||| |||||| ||||||||||| || Sbjct 4586421 CAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTA 4586480 Query 329 CCCTGGGGATA 339 | | ||||||| Sbjct 4586481 CTCCGGGGATA 4586491 Score = 167 bits (184), Expect = 5e-39 Identities = 226/311 (73%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCTAAC 88 |||||||| | | |||||| ||| |||| |||| | | || ||| ||||||| Sbjct 4741688 ACGCCAGTCTGCGTGGAGCCAACCTTGAAATACCACCCTT-TAACGTTTGATGTTCTAAC 4741746 Query 89 CGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCG 148 | | || ||| | ||| | ||||||||||| | ||| |||||||||||||||||| Sbjct 4741747 CTGGCGCCGTG-ATCCGGCGTGGGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCT 4741805 Query 149 CCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGC 208 ||||| ||||||||||||||| || | ||| | || | | || ||| | | || | Sbjct 4741806 CCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTAGCTAATCACGGTCGGACATCGTGAGG 4741865 Query 209 ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAG 268 ||||||| |||| ||| | |||||||||| | | || |||||| |||||| Sbjct 4741866 TTAGTGCAATGGCATAAGCTAGCTTGACTGCGAGAGTGACGGCTCGAGCAGGTGCGAAAG 4741925 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 || | || |||||||| ||| |||||||||| |||| |||||| ||||||||||| || Sbjct 4741926 CAGGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTA 4741985 Query 329 CCCTGGGGATA 339 | | ||||||| Sbjct 4741986 CTCCGGGGATA 4741996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982338472288