Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq122 385 1e-104 >seq122 Length=4874392 Score = 385 bits (426), Expect = 1e-104 Identities = 315/372 (85%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 4450950 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4450893 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4450892 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4450833 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| || Sbjct 4450832 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4450773 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | || ||| |||| ||| | | |||||||||||||||| ||| Sbjct 4450772 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4450713 Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 | ||| || |||| ||||||||||||| |||||||| |||||||||| | | | Sbjct 4450712 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4450654 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356 ||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| ||| Sbjct 4450653 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4450594 Query 357 T-CTACCGCTCG 367 | |||||| ||| Sbjct 4450593 TGCTACCGTTCG 4450582 Score = 385 bits (426), Expect = 1e-104 Identities = 315/372 (85%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 4582564 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4582507 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4582506 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4582447 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| || Sbjct 4582446 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4582387 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | || ||| |||| ||| | | |||||||||||||||| ||| Sbjct 4582386 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4582327 Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 | ||| || |||| ||||||||||||| |||||||| |||||||||| | | | Sbjct 4582326 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4582268 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356 ||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| ||| Sbjct 4582267 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4582208 Query 357 T-CTACCGCTCG 367 | |||||| ||| Sbjct 4582207 TGCTACCGTTCG 4582196 Score = 385 bits (426), Expect = 1e-104 Identities = 315/372 (85%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| ||||| Sbjct 4738068 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4738011 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4738010 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4737951 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| || Sbjct 4737950 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4737891 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 || |||||||||||| | || ||| |||| ||| | | |||||||||||||||| ||| Sbjct 4737890 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4737831 Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 | ||| || |||| ||||||||||||| |||||||| |||||||||| | | | Sbjct 4737830 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4737772 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356 ||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| ||| Sbjct 4737771 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4737712 Query 357 T-CTACCGCTCG 367 | |||||| ||| Sbjct 4737711 TGCTACCGTTCG 4737700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071932860640