Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq122 385 1e-104
>seq122
Length=4874392
Score = 385 bits (426), Expect = 1e-104
Identities = 315/372 (85%), Gaps = 8/372 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| |||||
Sbjct 4450950 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4450893
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4450892 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4450833
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||
Sbjct 4450832 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4450773
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|| |||||||||||| | || ||| |||| ||| | | |||||||||||||||| |||
Sbjct 4450772 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4450713
Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
| ||| || |||| ||||||||||||| |||||||| |||||||||| | | |
Sbjct 4450712 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4450654
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356
||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| |||
Sbjct 4450653 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4450594
Query 357 T-CTACCGCTCG 367
| |||||| |||
Sbjct 4450593 TGCTACCGTTCG 4450582
Score = 385 bits (426), Expect = 1e-104
Identities = 315/372 (85%), Gaps = 8/372 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| |||||
Sbjct 4582564 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4582507
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4582506 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4582447
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||
Sbjct 4582446 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4582387
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|| |||||||||||| | || ||| |||| ||| | | |||||||||||||||| |||
Sbjct 4582386 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4582327
Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
| ||| || |||| ||||||||||||| |||||||| |||||||||| | | |
Sbjct 4582326 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4582268
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356
||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| |||
Sbjct 4582267 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4582208
Query 357 T-CTACCGCTCG 367
| |||||| |||
Sbjct 4582207 TGCTACCGTTCG 4582196
Score = 385 bits (426), Expect = 1e-104
Identities = 315/372 (85%), Gaps = 8/372 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| || ||||||||||| ||||| ||||||||| |||||
Sbjct 4738068 CTTTACAACCCGAAGGCCTTCTT-CATACACGCGGCAT-GGCTGCATCAGGCTTGCGCCC 4738011
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4738010 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 4737951
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| ||||||||||||||||| || |||||||||||| |||||||| ||||| ||
Sbjct 4737950 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCA 4737891
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
|| |||||||||||| | || ||| |||| ||| | | |||||||||||||||| |||
Sbjct 4737890 CCTACTAGCTAATCCCATCTGGGCACATCCGATGGTGTGAGGCCCGAAGGTCCCCCACTT 4737831
Query 241 TCTCCCGTAGGACGT-ATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299
| ||| || |||| ||||||||||||| |||||||| |||||||||| | | |
Sbjct 4737830 TGGTCCGAAG-ACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTATCCCCCTCCATCG 4737772
Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA-AGAGAAGCAAGCT-TCTC 356
||||| |||| || ||||||||||||||||||| ||| ||| | |||||||| |||
Sbjct 4737771 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCACCCAAGAGCAAGCTCTCTG 4737712
Query 357 T-CTACCGCTCG 367
| |||||| |||
Sbjct 4737711 TGCTACCGTTCG 4737700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071932860640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |