Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq122 352 1e-94
>seq122
Length=4874392
Score = 352 bits (390), Expect = 1e-94
Identities = 410/543 (76%), Gaps = 20/543 (4%)
Strand=Plus/Minus
Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110
||| ||||| |||||| | | ||||||| | |||||||||| | | ||||||
Sbjct 4453348 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4453289
Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168
|||||| ||| || || |||| | |||| |||||||| ||||||||||||||||
Sbjct 4453288 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4453231
Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228
||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||||
Sbjct 4453230 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4453171
Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288
| | ||| |||||||||||||| || |||||| ||||||||||||||||| ||||
Sbjct 4453170 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4453111
Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348
|||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| ||
Sbjct 4453110 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4453052
Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
||||| ||| | || ||||||||| || ||| || || |||| | | |||| | ||
Sbjct 4453051 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4452994
Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468
||||| |||| ||||| ||| |||| ||||| || | ||||| | |||
Sbjct 4452993 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4452945
Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527
|||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||||
Sbjct 4452944 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4452885
Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587
|| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||||
Sbjct 4452884 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4452825
Query 588 CAC 590
||
Sbjct 4452824 GAC 4452822
Score = 352 bits (390), Expect = 1e-94
Identities = 410/543 (76%), Gaps = 20/543 (4%)
Strand=Plus/Minus
Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110
||| ||||| |||||| | | ||||||| | |||||||||| | | ||||||
Sbjct 4584961 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4584902
Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168
|||||| ||| || || |||| | |||| |||||||| ||||||||||||||||
Sbjct 4584901 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4584844
Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228
||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||||
Sbjct 4584843 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4584784
Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288
| | ||| |||||||||||||| || |||||| ||||||||||||||||| ||||
Sbjct 4584783 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4584724
Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348
|||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| ||
Sbjct 4584723 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4584665
Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
||||| ||| | || ||||||||| || ||| || || |||| | | |||| | ||
Sbjct 4584664 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4584607
Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468
||||| |||| ||||| ||| |||| ||||| || | ||||| | |||
Sbjct 4584606 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4584558
Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527
|||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||||
Sbjct 4584557 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4584498
Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587
|| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||||
Sbjct 4584497 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4584438
Query 588 CAC 590
||
Sbjct 4584437 GAC 4584435
Score = 352 bits (390), Expect = 1e-94
Identities = 410/543 (76%), Gaps = 20/543 (4%)
Strand=Plus/Minus
Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110
||| ||||| |||||| | | ||||||| | |||||||||| | | ||||||
Sbjct 4740466 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4740407
Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168
|||||| ||| || || |||| | |||| |||||||| ||||||||||||||||
Sbjct 4740406 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4740349
Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228
||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||||
Sbjct 4740348 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4740289
Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288
| | ||| |||||||||||||| || |||||| ||||||||||||||||| ||||
Sbjct 4740288 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4740229
Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348
|||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| ||
Sbjct 4740228 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4740170
Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
||||| ||| | || ||||||||| || ||| || || |||| | | |||| | ||
Sbjct 4740169 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4740112
Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468
||||| |||| ||||| ||| |||| ||||| || | ||||| | |||
Sbjct 4740111 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4740063
Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527
|||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||||
Sbjct 4740062 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4740003
Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587
|| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||||
Sbjct 4740002 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4739943
Query 588 CAC 590
||
Sbjct 4739942 GAC 4739940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817486163712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |