Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq122 352 1e-94 >seq122 Length=4874392 Score = 352 bits (390), Expect = 1e-94 Identities = 410/543 (76%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110 ||| ||||| |||||| | | ||||||| | |||||||||| | | |||||| Sbjct 4453348 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4453289 Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| || || |||| | |||| |||||||| |||||||||||||||| Sbjct 4453288 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4453231 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||| | ||||| ||||||| || | ||||||| Sbjct 4453230 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4453171 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | ||| |||||||||||||| || |||||| ||||||||||||||||| |||| Sbjct 4453170 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4453111 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| || Sbjct 4453110 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4453052 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||||| ||| | || ||||||||| || ||| || || |||| | | |||| | || Sbjct 4453051 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4452994 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| ||| |||| ||||| || | ||||| | ||| Sbjct 4452993 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4452945 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 |||||||||| || ||||||||||| | | ||||| |||||| |||||||||||||||| Sbjct 4452944 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4452885 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || || | |||||||||| |||||||||||| ||| || ||||||| ||| ||||| Sbjct 4452884 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4452825 Query 588 CAC 590 || Sbjct 4452824 GAC 4452822 Score = 352 bits (390), Expect = 1e-94 Identities = 410/543 (76%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110 ||| ||||| |||||| | | ||||||| | |||||||||| | | |||||| Sbjct 4584961 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4584902 Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| || || |||| | |||| |||||||| |||||||||||||||| Sbjct 4584901 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4584844 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||| | ||||| ||||||| || | ||||||| Sbjct 4584843 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4584784 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | ||| |||||||||||||| || |||||| ||||||||||||||||| |||| Sbjct 4584783 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4584724 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| || Sbjct 4584723 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4584665 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||||| ||| | || ||||||||| || ||| || || |||| | | |||| | || Sbjct 4584664 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4584607 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| ||| |||| ||||| || | ||||| | ||| Sbjct 4584606 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4584558 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 |||||||||| || ||||||||||| | | ||||| |||||| |||||||||||||||| Sbjct 4584557 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4584498 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || || | |||||||||| |||||||||||| ||| || ||||||| ||| ||||| Sbjct 4584497 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4584438 Query 588 CAC 590 || Sbjct 4584437 GAC 4584435 Score = 352 bits (390), Expect = 1e-94 Identities = 410/543 (76%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG-GGCCCCCTAGACCATCCAGTGC 110 ||| ||||| |||||| | | ||||||| | |||||||||| | | |||||| Sbjct 4740466 CGGTATTCGCAGTTTGCATCGGGTTGGTAAGCCGGGATGGCCCCCTAGCCGAAACAGTGC 4740407 Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| || || |||| | |||| |||||||| |||||||||||||||| Sbjct 4740406 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 4740349 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||| | ||||| ||||||| || | ||||||| Sbjct 4740348 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA 4740289 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | ||| |||||||||||||| || |||||| ||||||||||||||||| |||| Sbjct 4740288 CATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAGA 4740229 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| || Sbjct 4740228 TCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCCT 4740170 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||||| ||| | || ||||||||| || ||| || || |||| | | |||| | || Sbjct 4740169 GCGGCTCCCCTATAC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATACA 4740112 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| ||| |||| ||||| || | ||||| | ||| Sbjct 4740111 AAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTACGTACA 4740063 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 |||||||||| || ||||||||||| | | ||||| |||||| |||||||||||||||| Sbjct 4740062 CGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 4740003 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || || | |||||||||| |||||||||||| ||| || ||||||| ||| ||||| Sbjct 4740002 CTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 4739943 Query 588 CAC 590 || Sbjct 4739942 GAC 4739940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817486163712