Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq122 471 1e-130 >seq122 Length=4874392 Score = 471 bits (522), Expect = 1e-130 Identities = 359/411 (87%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 4453196 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 4453140 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 4453139 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 4453084 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||| ||||||| ||| | Sbjct 4453083 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-G 4453026 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 4453025 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACGAAG-GT 4452967 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||| Sbjct 4452966 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTC 4452907 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 4452906 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 4452847 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| | || |||| ||| ||||||| Sbjct 4452846 GAGGATGGTCCCCCCATATTCAGACAGGATGTCACGTGTCCCGCCCTACTC 4452796 Score = 471 bits (522), Expect = 1e-130 Identities = 359/411 (87%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 4584809 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 4584753 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 4584752 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 4584697 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||| ||||||| ||| | Sbjct 4584696 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-G 4584639 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 4584638 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACGAAG-GT 4584580 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||| Sbjct 4584579 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTC 4584520 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 4584519 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 4584460 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| | || |||| ||| ||||||| Sbjct 4584459 GAGGATGGTCCCCCCATATTCAGACAGGATGTCACGTGTCCCGCCCTACTC 4584409 Score = 471 bits (522), Expect = 1e-130 Identities = 359/411 (87%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 4740314 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 4740258 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 4740257 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 4740202 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||| ||||||| ||| | Sbjct 4740201 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTGCGGCTCCCCTATACGGTTAACCTT-G 4740144 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | || ||| | Sbjct 4740143 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACGAAG-GT 4740085 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||| Sbjct 4740084 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTGTTTCACTCCCCTCGCCGGGGTTC 4740025 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 4740024 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 4739965 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| | || |||| ||| ||||||| Sbjct 4739964 GAGGATGGTCCCCCCATATTCAGACAGGATGTCACGTGTCCCGCCCTACTC 4739914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241522238592