Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq871 87.8 1e-15 seq228 78.8 6e-13 seq183 73.4 2e-11 >seq871 Length=10861 Score = 87.8 bits (96), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| ||||||| || ||||||||| ||||||||||| |||||||||| Sbjct 2374 TCCGAAGGC-CTCACTGAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 2318 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 2317 GGCAGGGACGTAAT 2304 >seq228 Length=334299 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || | ||||||| ||||||||||| |||||||||| Sbjct 80180 TCCGAA-GACCTCACTAAATCATT-CAATGGGTAGTA-GCGACGGGCGGCGTGTACAAAG 80124 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 80123 GGCAGGGACGTAAT 80110 >seq183 Length=415644 Score = 73.4 bits (80), Expect = 2e-11 Identities = 56/64 (88%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||| | Sbjct 263912 CTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGTTG 263969 Query 109 TAAT 112 |||| Sbjct 263970 TAAT 263973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300782338340