Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq122 147 5e-33 >seq122 Length=4874392 Score = 147 bits (162), Expect = 5e-33 Identities = 276/401 (69%), Gaps = 15/401 (4%) Strand=Plus/Minus Query 3 ATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGA 62 |||||||||| ||||||||||| | ||||| ||||| || || ||||||||||| | Sbjct 742264 ATGGTCAGCAGATCGCCGCCCACTTCCGTCCATGCCAGACCGGTCACCTGACCGACGCGG 742205 Query 63 TCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGA 121 | | |||| ||||| | |||||| ||| |||| |||||||| | | ||| Sbjct 742204 TTTTCGCTG-TCGGCACGACCGTAGTCGAAACGCTGCACCCCGAGGAAATCTTTCAGATT 742146 Query 122 GTCGGCCGTGACCTTCACCGAGAAGCGT-------TTTTCCAGC-GCATGTTCCTTGACC 173 |||||| ||| | ||| | | | || |||| | ||| | | || ||| Sbjct 742145 GTCGGCGTTGATTT----CGATATGTTTGATCGACTTATCCATCAGCAGGGTT-TTCACC 742091 Query 174 GCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTG 233 ||||| ||||| | ||| | | | ||||| |||| |||||| || ||||| |||||| Sbjct 742090 GCCTTACGGCACAGCTTGGACAGTTCACGCTCAAGGCTACGCACGCCCGCTTCACGGGTG 742031 Query 234 TAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGG 293 ||||| || | |||| | ||| | || | | || | | ||| |||||||| Sbjct 742030 TAGTAACGAATGATGCCAACGATGGCGCTGTCGTCCACGGTCAGCTCATTTTTCTTCAGC 741971 Query 294 CCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCT 353 ||||| | ||||||||||| | |||| || | || || |||| || ||||| Sbjct 741970 GCATTGCGCTCAATCTGCTTGGACAGCAGGTGCTGCTTAGCAATATTGAGTTTTTCGTCC 741911 Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||| || | |||||||||||||||||| || ||||| Sbjct 741910 TCGGTGTAGCCGGACAGGCGAATCACTTCCATACGATCCAG 741870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158327449408