Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq122 251 2e-64 >seq122 Length=4874392 Score = 251 bits (278), Expect = 2e-64 Identities = 311/423 (74%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 ||||||||||||||||| || || ||||| | || ||||| || |||||||| || || Sbjct 3916927 ATCAGGAACACTTCACGTGCCCCAGCGCCCTGCGCGGATTCGCGAATGGCACGGCGTTCG 3916986 Query 63 ACCTGGGT-GGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACT 121 ||||| || | || | | ||| || || | |||||| || ||||| || ||| ||| || Sbjct 3916987 ACCTGAGTCGCACCTAC-CGGTACACACACCAGCACGCGCGGGCTTGGGCGCATGAAGCT 3917045 Query 122 GTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGC 181 ||| |||||||| ||||| |||| ||||||||| || ||| ||| ||||||||| Sbjct 3917046 GTTGCTGTGAACCTGTTTGATAAAGTGCTGCAGCATTTTTTCGGTGACAAAGAAGTCGGC 3917105 Query 182 GATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCAT 241 ||| ||||| |||||||| || ||||| || || |||||||| || ||||| || ||||| Sbjct 3917106 GATAACGCCATCTTTCATTGGGCGAATAGCTGCGATATTGCCGGGGGTACGACCCAGCAT 3917165 Query 242 GCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACC------ATGGGTCCG 295 | ||||| || ||||| || | || ||||| | ||| || || Sbjct 3917166 CTGTTTGGCGTCATGACCGACTGCCGCCACGCTTTTAGGGGAACCGGCACGATCCTGACG 3917225 Query 296 AATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGT 355 || || || || || |||||||| || || || || || | ||||||||| ||||| Sbjct 3917226 GATAGCAACGACGGAAGGCTCATTAAGAACAATGCCCTGCCCTTTCACGTAAATCAGGGT 3917285 Query 356 GTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAA 415 ||||| || |||||||| ||||| | ||| |||||||||||||||| | ||| || || Sbjct 3917286 ATTGGCGGTACCCAGGTCGATGGACAAGTCGTTGGAAAACATGCCACGGAATTTTTTAAA 3917345 Query 416 CAT 418 ||| Sbjct 3917346 CAT 3917348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1353515224032