Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq122 215 1e-53 >seq122 Length=4874392 Score = 215 bits (238), Expect = 1e-53 Identities = 297/408 (73%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 4453802 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 4453743 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 4453742 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 4453683 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || ||||| | || ||| Sbjct 4453682 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCAACGGCTTACAG 4453625 Query 178 GACGCTCCCCTACCCAACCACACAGGT-------TGCCACAGCTTCGGCGGATAACTTAA 230 ||||||||||||||||| | || | |||| ||||||||| | || ||| Sbjct 4453624 AACGCTCCCCTACCCAACAATACTTGCGTATCGCTGCCGCAGCTTCGGTGCATGGTTTA- 4453566 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 4453565 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 4453506 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 4453505 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACATCGTTTCCCACT 4453446 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 4453445 TAACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 4453398 Score = 215 bits (238), Expect = 1e-53 Identities = 297/408 (73%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 4585415 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 4585356 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 4585355 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 4585296 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || ||||| | || ||| Sbjct 4585295 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCAACGGCTTACAG 4585238 Query 178 GACGCTCCCCTACCCAACCACACAGGT-------TGCCACAGCTTCGGCGGATAACTTAA 230 ||||||||||||||||| | || | |||| ||||||||| | || ||| Sbjct 4585237 AACGCTCCCCTACCCAACAATACTTGCGTATCGCTGCCGCAGCTTCGGTGCATGGTTTA- 4585179 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 4585178 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 4585119 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 4585118 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACATCGTTTCCCACT 4585059 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 4585058 TAACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 4585011 Score = 215 bits (238), Expect = 1e-53 Identities = 297/408 (73%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 4740920 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 4740861 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 4740860 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 4740801 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || ||||| | || ||| Sbjct 4740800 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCAACGGCTTACAG 4740743 Query 178 GACGCTCCCCTACCCAACCACACAGGT-------TGCCACAGCTTCGGCGGATAACTTAA 230 ||||||||||||||||| | || | |||| ||||||||| | || ||| Sbjct 4740742 AACGCTCCCCTACCCAACAATACTTGCGTATCGCTGCCGCAGCTTCGGTGCATGGTTTA- 4740684 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 4740683 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 4740624 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 4740623 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACATCGTTTCCCACT 4740564 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 4740563 TAACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 4740516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177526246912