Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq122 226 5e-57
seq705 73.4 7e-11
>seq122
Length=4874392
Score = 226 bits (250), Expect = 5e-57
Identities = 224/290 (77%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| |
Sbjct 4451292 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4451233
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 4451232 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4451173
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || ||||||| ||||||| |||||||||| | ||||||||| ||||
Sbjct 4451172 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4451113
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| ||
Sbjct 4451112 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4451053
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||| ||||||||| |||| ||| | ||||
Sbjct 4451052 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4451003
Score = 226 bits (250), Expect = 5e-57
Identities = 224/290 (77%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| |
Sbjct 4582906 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4582847
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 4582846 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4582787
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || ||||||| ||||||| |||||||||| | ||||||||| ||||
Sbjct 4582786 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4582727
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| ||
Sbjct 4582726 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4582667
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||| ||||||||| |||| ||| | ||||
Sbjct 4582666 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4582617
Score = 226 bits (250), Expect = 5e-57
Identities = 224/290 (77%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| |
Sbjct 4738410 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4738351
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 4738350 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4738291
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || ||||||| ||||||| |||||||||| | ||||||||| ||||
Sbjct 4738290 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4738231
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||| | || |||||| |||| ||| |||| |||||||||| ||| ||
Sbjct 4738230 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4738171
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||| ||||||||| |||| ||| | ||||
Sbjct 4738170 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4738121
>seq705
Length=31904
Score = 73.4 bits (80), Expect = 7e-11
Identities = 66/83 (80%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| ||| |||| ||||||| |||||||||| |||| || ||| |||||||||
Sbjct 25821 TTACCGTCTACTTACCCTTTAAACCCAATAAAGATAACTAACACTAGCCTTCTACGTATT 25880
Query 245 ACCGCGGCTGCTGGCACGTAGTT 267
|||||| ||||||||||||||||
Sbjct 25881 ACCGCGACTGCTGGCACGTAGTT 25903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828749714373
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |