Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq122 226 5e-57 seq705 73.4 7e-11 >seq122 Length=4874392 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| | Sbjct 4451292 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4451233 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||||||| ||||||| ||||| || || Sbjct 4451232 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4451173 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || ||||||| ||||||| |||||||||| | ||||||||| |||| Sbjct 4451172 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4451113 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||| | || |||||| |||| ||| |||| |||||||||| ||| || Sbjct 4451112 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4451053 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||| ||| | |||| Sbjct 4451052 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4451003 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| | Sbjct 4582906 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4582847 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||||||| ||||||| ||||| || || Sbjct 4582846 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4582787 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || ||||||| ||||||| |||||||||| | ||||||||| |||| Sbjct 4582786 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4582727 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||| | || |||||| |||| ||| |||| |||||||||| ||| || Sbjct 4582726 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4582667 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||| ||| | |||| Sbjct 4582666 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4582617 Score = 226 bits (250), Expect = 5e-57 Identities = 224/290 (77%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||| ||||||||| ||||||| ||||||||||||| ||| | Sbjct 4738410 CCCACGCTTTCGCACCTGAGCGTCAGTCTTTGTCCAGGGGGCCGCCTTCGCCACCGGTAT 4738351 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||||||| ||||||| ||||| || || Sbjct 4738350 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCCCTCTACAAGAC 4738291 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || ||||||| ||||||| |||||||||| | ||||||||| |||| Sbjct 4738290 TCTAGCCTGCCAGTTTCGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCGACT 4738231 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||| | || |||||| |||| ||| |||| |||||||||| ||| || Sbjct 4738230 TGACAGACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCCG 4738171 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||| ||| | |||| Sbjct 4738170 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA 4738121 >seq705 Length=31904 Score = 73.4 bits (80), Expect = 7e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || ||| |||| ||||||| |||||||||| |||| || ||| ||||||||| Sbjct 25821 TTACCGTCTACTTACCCTTTAAACCCAATAAAGATAACTAACACTAGCCTTCTACGTATT 25880 Query 245 ACCGCGGCTGCTGGCACGTAGTT 267 |||||| |||||||||||||||| Sbjct 25881 ACCGCGACTGCTGGCACGTAGTT 25903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828749714373